BAC Information

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BAC

Clone NameMSMg01-086H20
ChromosomeX (Build37)
Map Location 94,940,071 - 94,940,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675824, LOC668234, EG668236, LOC668238, Pgr15l, Eda2r
Downstream geneLOC668244, Ar, LOC100042324, Ophn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086H20.T7 (MSMg01no086_h20.b1)MSMg01-086H20.TJ (MSMg01no086_h20.g1)
ACCAG305787AG305788
length671672
length of high quality
(start - end)
453 (48 - 500)286 (55 - 340)
definitionCHROMAT_FILE: MSMg01no086_h20.b1 PHD_FILE: MSMg01no086_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:15 2005CHROMAT_FILE: MSMg01no086_h20.g1 PHD_FILE: MSMg01no086_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATCCAGAGATCCGCGGAATTCAGTCTCATATCCGCAATCAGAT
TTCATAGTCTGAATATTTCATCTTTCCACTCCTACTCAGATAGAGAACCA
ATATATGAACTTTATAAAAGACAGACCTCTTTTGTATGCAGTTGTTCTAA
ATGAAAACTTATTTGAAGTGGGTATACTGGGTGTATGTTGAACCAGTAGT
TTAGCTTGCTAGTACAGTAAAAATGTTAACTCCAATTAAAAATAAAGGTA
TTGAAGTTAAGTGATGCTACATTAAGCATCTTACATGATGCATCTTTATA
TACTTCCATGACAAAACAAACAAAAAGACTGCTGGAGATAATACAAACTG
TATCCTGTGATTCAGATGTTCTAAGTACCTATCATCTGTAAGAATATAAT
TCACTGTTTATTGCTTCACAAATGATTATACATGAGTTGTAATGTAGCTA
CCCCTTCAAGTCTGAAAGTTAAAAGCTCTAATACTGCATGATGAATTGCA
AAGCTGATCCAATAAGTTATTACTGTTTTGAGTAAGAAATGTTTTATCGC
TTACAGTCTACTCCTTTGACATTAAAGCGAATGCATATAATTTTTACTTC
TCCCTCTATAATATGGGAACATATGATAATGATTTTACTAAAATATCATA
ATGTATATAAAACTTTTATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTGAATGTTTAGCTGTTATTTTGATGGATTTTCCTTCCCTAATGA
CCCTCTTTGTTGTTGTTTTCTCTGGAGTTTTCAGTATTTTTCTATTTTTT
TCACTTTACATCTCTATTGCTGCTCCCTTGCCTGGTCCTTCCCTTCCACA
GTCCTTCCCTGCACCCCTCCCCTTCTTGTCTGAGAGATTGGAGGCCCTCC
TTGAGTGTCCCCCTACCCTAGAATATCAAGTCTCTGCAGGGCTAGGTGCT
TCCTCTCACACTGAGGCCAGAAAAGACAGCTAAGTTAGAGGATTATTTTT
CCCCACACCCCCAACAGTTTTAGGGAAAGACCCTGCTCCATTTCGGCACC
CACATGAAGGCCAAGCTGCACATATCCTACATGTGTGTGGTAGGTGGCAG
ATTTAGGTCCAATCCATTATGCTTTCTACTTGGTTATTCAATCTCTGAGA
GCCACCAAGGGTCCAGGTTATGGCTGTTGGTGCGCCTGTGTATTTTCTAT
CCCCTTCAGGTCCTCTTGATTGGAAACTTCTGGCATCACTGGAAAGTCAG
CTGCGCCAAATCATGTTTTGCTGATGTTTACAATTAAACTATGTTTTGCC
TATATCTGTTCTCGCAATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_h20.b1 MSMg01no086_h20.b1 CHROMAT_FILE:
MSMg01no086_h20.b1 PHD_FILE: MSMg01no086_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:15 2005
         (453 letters)



>mm_chrX_94939871_94940723
          Length = 853

 Score =  837 bits (433), Expect = 0.0
 Identities = 448/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttcatagtctgaatatttcatctttccactcctactcagatagagaaccaatatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 gatttcatagtctgaatatttcatctttccactcctactcagatagagaaataatatatg 260

                                                                       
Query: 61  aactttataaaagacagacctcttttgtatgcagttgttctaaatgaaaacttatttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttataaaagacagacctcttttgtatgcagttgttctaaatgaaaacttatttgaa 320

                                                                       
Query: 121 gtgggtatactgggtgtatgttgaaccagtagtttagcttgctagtacagtaaaaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggtatactgggtgtatgttgaaccagtagtttagcttgctagtacagtaaaaatgtt 380

                                                                       
Query: 181 aactccaattaaaaataaaggtattgaagttaagtgatgctacattaagcatcttacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactccaattaaaaataaaggtattgaagttaagtgatgctacattaagcatcttacatg 440

                                                                       
Query: 241 atgcatctttatatacttccatgacaaaacaaacaaaaagactgctggagataatacaaa 300
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atgcatctttatagacttccatgacaaaacaaacaaaaagactgctggagataaaacaaa 500

                                                                       
Query: 301 ctgtatcctgtgattcagatgttctaagtacctatcatctgtaagaatataattcactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtatcctgtgattcagatgttctaagtacctatcatctgtaagaatataattcactgt 560

                                                                       
Query: 361 ttattgcttcacaaatgattatacatgagttgtaatgtagctaccccttcaagtctgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattgcttcacaaatgattatacatgagttgtaatgtagctaccccttcaagtctgaaa 620

                                            
Query: 421 gttaaaagctctaatactgcatgatgaattgca 453
           |||||||||||||| ||||||||||||||||||
Sbjct: 621 gttaaaagctctaaaactgcatgatgaattgca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)