BAC Information

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BAC

Clone NameMSMg01-087B04
ChromosomeX (Build37)
Map Location 107,815,177 - 107,815,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245573, EG634340, LOC668530
Downstream geneLOC100043316, Pou3f4, Cylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B04.T7 (MSMg01no087_b04.b1)MSMg01-087B04.TJ (MSMg01no087_b04.g1)
ACCAG306207AG306208
length696732
length of high quality
(start - end)
326 (50 - 375)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no087_b04.b1 PHD_FILE: MSMg01no087_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:03 2005CHROMAT_FILE: MSMg01no087_b04.g1 PHD_FILE: MSMg01no087_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTACCATATGTTCGAGATCCGCGGAATTCTTCATAAGAACACCATAACA
CCAAATTAGATTAGAATGCACCACCCAACATCCTTTTCCTGGTTCTCAGA
AACTTCTTCTGAACAAATGGTAAGCACCATCTTAGAGAATAAAAGTTTGG
TGCTGTTGTTTGTTTTCTCTTGCTGTGACAAACAAACAAACAAATGACCC
CAGCTTACTGAACAGGTGACTTATTGGGACTCTGTTTCAATCAGAGCCAA
TTATTGAGCAGGGCATAAACTCAAGGCAGGAAACTGGAGTCAGGAAATGA
AGAAAAGAACAAGGAATAACTCTGCTTTGCTCCCCCGGCTTGTTCGGCTT
GCTTACTTATACAAGAACCATGTCTCCAGTAGCGGTTCTTTCAGTCCTCA
TACATCATTAATCAAGAAAATACACCACAGTGTTATTTACTTATAGGTCA
AATTTGATGCATTCATTCCTTTCAGGTCTGGCCCCAATTCCTTAGATTAC
TCTAGTCTCTGTCCCCTACACAAAAATTAACCCCTTACAACTGACCCCTT
GCGATTTTTACACCAACTGCATCACTATCAAACCCTAACCTCTCCCTTCT
TGTCAACCCTTACACCCCCCGGAAACCCTTGATTCTTAACCGACTATTAA
CCTATATACACCTCAATCCGTACCCTCGGTAACACAGACCCTTTGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGATATTATTGCCTAAGCTATTTG
TGTCTTTTGTAGAAAGTCTTTGTCTATGCCAATAACTAAATATTTTAACT
ATGCATTCTACAGTTTTAGACTTTTATATCTTAAATTAATTTTTAGTAGT
TGAATTTATGCAAGGGAACAGATAGGAGGCTAGTTACATTATTTTGTGCA
TGTGGATATCAAGTTTCCCCTGCATTATTTTGAAGGAAGCTGTCATTTCA
CAAATACATGTTTGGGCATCTTTGCCAAAAATCAGCTTTAGTGGTCACTT
TAATTCTGGGACACAAATTTGAGTTTATCACTATATTCATCTGCTTCTCT
GTTAGTATTGCGCTGCCTTTTCTCATTATTTCTTAACATAACTTGAAACC
AACCATTATCTTACCTCTTATCCTTCTTGATTAGGCGCGCCATTAACTAC
TTGCGGCCTTTTACATCCTTTGCTATGAAGTTGCGACCTTTCCTTTCTCT
TGTGCAGAAATAACTTATTCTTGGCATGCTTACCTATTACCTCTTTATTC
TTATACCTGGTTCTTTTCCCACTATTAACCTTTGCTGGACTCCAAAGCGT
TGCGCCTCTGGGTCTTTCCAACTCCCTTAGGTTTCCCCCTTTACCCCTTC
CTGTCACCGCCCATTTTTTCGCTTACTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b04.b1 MSMg01no087_b04.b1 CHROMAT_FILE:
MSMg01no087_b04.b1 PHD_FILE: MSMg01no087_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:03 2005
         (326 letters)



>mm_chrX_107814977_107815702
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaaattagattagaatgcaccacccaacatccttttcctggttctcagaaacttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaaattagattagaatgcaccacccaacatccttttcctggttctcagaaacttcttc 260

                                                                       
Query: 61  tgaacaaatggtaagcaccatcttagagaataaaagtttggtgctgttgtttgttttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacaaatggtaagcaccatcttagagaataaaagtttggtgctgttgtttgttttctc 320

                                                                       
Query: 121 ttgctgtgacaaacaaacaaacaaatgaccccagcttactgaacaggtgacttattggga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttgctgtgacaaacaaacaaacaaatgacctcagcttactgaacaggtgacttattggga 380

                                                                       
Query: 181 ctctgtttcaatcagagccaattattgagcagggcataaactcaaggcaggaaactggag 240
           ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctctgttccaatcagagtcaattattgagcagggcataaactcaaggtaggaaactggag 440

                                                                       
Query: 241 tcaggaaatgaagaaaagaacaaggaataactctgctttgctcccccggcttgttcggct 300
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 441 tcaggaaatgaagaaaagaacaaggaataattctgctttgctcccccggcttgttcggtt 500

                                     
Query: 301 tgcttacttatacaagaaccatgtct 326
           ||||||||||||||||||||||||||
Sbjct: 501 tgcttacttatacaagaaccatgtct 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)