BAC Information

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BAC

Clone NameMSMg01-087I20
ChromosomeX (Build37)
Map Location 156,796,739 - 156,797,080
singlet/doubletsinglet
Overlap genenone
Upstream geneRps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427
Downstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I20.T7 (MSMg01no087_i20.b1)MSMg01-087I20.TJ (MSMg01no087_i20.g1)
ACCAG306549AG306550
length714714
length of high quality
(start - end)
534 (42 - 575)595 (68 - 662)
definitionCHROMAT_FILE: MSMg01no087_i20.b1 PHD_FILE: MSMg01no087_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005CHROMAT_FILE: MSMg01no087_i20.g1 PHD_FILE: MSMg01no087_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
ATGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAATTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTACCCATTCCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGGGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGCTTTTATCACCATTGCCCTGT
AATAAAGCTTTAGCTCAGCGCTGGCATGATCATTCGAGGTTCTTTTATCC
TTGTAAAAATTTTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTATTCATTCACTTAATTAATATTTATCAAG
AATCTTGTGGAACCTGGCTCTGTTCCAAGTGCCAGAATTCCATAATAAAA
GTGCAAATCCTGTAACTCAAAGAACTTTCCAAAGTAACTAAAGCTTTATT
CCCATAGGACAGCTGTTCTCAATGGGTGGGTCTCAACCCCTTTGAGTGTC
ACATGCCAGATATCCTGCATAGCAAATATTTCACATTATGATCCATAACA
GCAGTGAAATTTCAGTTATAAAGTATCAATGAAATCATTTTATGGTTGGG
GGGTCACTACAACACGAGGAACTATATTAAGGGGTAGAAGCATTAGGAAG
GTTGAGAACCACTGACATAGGACATAATATTTAAAAATAATATTGTAGCT
GTGATTGTGTTTAGCAGCAGAGCTCTTATGTAGCATGCTTGAGGCTCTGG
ATGTGAGAGAGTAAAATAAATAAAGCAAAATAAATAAATTAGGCTTGGGA
GACAGCTCAATCAGTAAAGTGCTTGTCTGGAAAACATGAGAGTCTGGCTG
GAATCCTCAGAACCCACACCAAAAAAAAAATGCCAGGCCTGGTGACATAT
GCTTTTAATCCCAACCCTAAAACTGAAAACATGCAGGTCCCAGAAGTTTA
CTTGCTCACAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i20.g1 MSMg01no087_i20.g1 CHROMAT_FILE:
MSMg01no087_i20.g1 PHD_FILE: MSMg01no087_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:43 2005
         (595 letters)



>mm_chrX_156796739_156797733
          Length = 995

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttattcattcacttaattaatatttatcaagaatcttgtggaacctggctctgttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atttattcattcacttaattaatatttatcaagaatcttgtggaacctggctctgttcca 283

                                                                       
Query: 61  agtgccagaattccataataaaagtgcaaatcctgtaactcaaagaactttccaaagtaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtgccagaattccaaaataaaagtgcaaatcctgtaactcaaagaactttccaaagtaa 223

                                                                       
Query: 121 ctaaagctttattcccataggacagctgttctcaatgggtgggtctcaacccctttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctaaagctttattcccataggacagctgttctcaatgggtgggtctcaacccctttgagt 163

                                                                       
Query: 181 gtcacatgccagatatcctgcatagcaaatatttcacattatgatccataacagcagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gtcacatgccagatatcctgcatagcaaatatttcacattatgatccataacagcagtga 103

                                                                       
Query: 241 aatttcagttataaagtatcaatgaaatcattttatggttggggggtcactacaacacga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aatttcagttataaagtatcaatgaaatcattttatggttggggggtcactacaacacga 43

                                                     
Query: 301 ggaactatattaaggggtagaagcattaggaaggttgagaac 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ggaactatattaaggggtagaagcattaggaaggttgagaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)