BAC Information

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BAC

Clone NameMSMg01-087I22
ChromosomeX (Build37)
Map Location 156,796,739 - 156,797,080
singlet/doubletsinglet
Overlap genenone
Upstream geneRps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427
Downstream geneGpr64, Phka2, Ppef1, Rs1, Gja6, Scml2, LOC414364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I22.T7 (MSMg01no087_i22.b1)MSMg01-087I22.TJ (MSMg01no087_i22.g1)
ACCAG306553AG306554
length704702
length of high quality
(start - end)
661 (44 - 704)622 (71 - 692)
definitionCHROMAT_FILE: MSMg01no087_i22.b1 PHD_FILE: MSMg01no087_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005CHROMAT_FILE: MSMg01no087_i22.g1 PHD_FILE: MSMg01no087_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGATGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAATTTTGGAGTTTCGTTA
GGTTCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTACCCATACCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGGGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGATTT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCT
GTAGTATAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTAT
CCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTATTCATTCACTTAATTAATATTTATC
AAGAATCTTGTGGAACCTGCCTCTGTTCCAAGTGCCAGAATTCCAAAATA
AAAGTGCAAATCCTGTAACTCAAAGAACTTTCCAAAGTAACTAAAGCTTT
ATTCCCATAGGACAGCTGTTCTCAATGGGTGGGTCTCAACCCCTTTGAGT
GTCACATGCCAGATATCCTGCATAGCAAATATTTCACATTATGATCCATA
ACAGCAGTGAAATTTCATTTATTAAGTATCAATGAAATCATTTTATGGTT
GGGGGGTCACTACAACACGAGGAACTATATTAAGGGGTAGAAGCATTAGG
AAGGTTGAGAACCACTGACATAGGACATAATATTTAAAAATAATATTGTA
GCTGTGATTGTGTTTAGCAGCAGAGCTCTTATGTAGCATGCTTGAGGCTC
TGGATGTGAGAGAGTAAAATAAATAAAGCAAAATAAATAAATTAGGCTTG
GGAGACAGCTCAATCAGTAAAGTGCTTGTCTGGAAAACATGAGAGTCTGG
CTGGAATCCTCAGAACCCACACCAAAAAAAAAATGCCAGGCCTGGTGACA
TATGCTTTTAATCCCAACCCTAAAACTGAAAACATGCAGGTCCCAGAAGT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i22.g1 MSMg01no087_i22.g1 CHROMAT_FILE:
MSMg01no087_i22.g1 PHD_FILE: MSMg01no087_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:43 2005
         (622 letters)



>mm_chrX_156796739_156797760
          Length = 1022

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttattcattcacttaattaatatttatcaagaatcttgtggaacctgcctctgttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 342 atttattcattcacttaattaatatttatcaagaatcttgtggaacctggctctgttcca 283

                                                                       
Query: 61  agtgccagaattccaaaataaaagtgcaaatcctgtaactcaaagaactttccaaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtgccagaattccaaaataaaagtgcaaatcctgtaactcaaagaactttccaaagtaa 223

                                                                       
Query: 121 ctaaagctttattcccataggacagctgttctcaatgggtgggtctcaacccctttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctaaagctttattcccataggacagctgttctcaatgggtgggtctcaacccctttgagt 163

                                                                       
Query: 181 gtcacatgccagatatcctgcatagcaaatatttcacattatgatccataacagcagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gtcacatgccagatatcctgcatagcaaatatttcacattatgatccataacagcagtga 103

                                                                       
Query: 241 aatttcatttattaagtatcaatgaaatcattttatggttggggggtcactacaacacga 300
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aatttcagttataaagtatcaatgaaatcattttatggttggggggtcactacaacacga 43

                                                     
Query: 301 ggaactatattaaggggtagaagcattaggaaggttgagaac 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ggaactatattaaggggtagaagcattaggaaggttgagaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)