BAC Information

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BAC

Clone NameMSMg01-088B06
ChromosomeX (Build37)
Map Location 7,126,131 - 7,126,419
singlet/doubletsinglet
Overlap genenone
Upstream geneShroom4, LOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973
Downstream genePpp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B06.T7 (MSMg01no088_b06.b1)MSMg01-088B06.TJ (MSMg01no088_b06.g1)
ACCAG306928AG306929
length706707
length of high quality
(start - end)
568 (46 - 613)302 (77 - 378)
definitionCHROMAT_FILE: MSMg01no088_b06.b1 PHD_FILE: MSMg01no088_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:25 2005CHROMAT_FILE: MSMg01no088_b06.g1 PHD_FILE: MSMg01no088_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGACCAGGCTGGCCTGGAACTCATAGAAGTCGCCTGTC
TCTGCCTCCACTACCCAGAAATTCAAGTCTACCTTTAAATTCATAGTTTG
AGGCTAGCCTGTGCAACATGAAAGTCAGCCTCAAACAACTCATTTTTGGG
CTGGGTGTGGTGGTGCAGTCTTCATCCTAGCACTCAGGAGGCAGAGGCAA
GCAGAGGTCTGTGAGTTTGAGGCCAGTCTGGTCTGAGTAGTGAGTTCCAG
GACAGCCAGGGTCACATAAGTAGATCCTGTCTCAAACAAAACCAAAACCA
AAACCAACCAACTAACTAACCAACCAAACAAAAAAACCCAAAACAAACCA
CCCAACCAAACCAAAAAGACCCTAATTTTAAAAATATATTTGAGTACATG
TTTATACATATACAAAATATAAATTTAAATTTATAAAATATATAAATATA
CATTTTAAAGAAACAGACATCACTCATTGATGCATATATAAACTTATGTA
TATACAACTTAGCACATAGATGCATATGTACATGTATAAATTTTTTTTGG
CTGTCTTTTGAGACAGGGTCTTTTTATGTTCCAGGTCCTGCCTGTCCTGG
AACTCCTTATGTAGAAGAGGCTAGGCTCAAATTCACAGAAATCTACATGC
TTCTGG
TCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAGGCAGTTTGCCTTGGGAG
ACGATCATCTTCACTCAGGGTGACCAACAACAAAAAACAACAAAAAAAAA
CCAAAAACAAAAAAAAACCCTATGTACCCCAGACTAATGTTCAGTTCATG
ATTCCCCTGCCTCAGTCTCCAAACAGCACCATCTCACACTTTTAATACTT
TTCAGTTCTGTATCATATACGTTCCCTTCATTTCAATAAATCTAGGTATC
TGGGGAGATAGCTCAGTTGGCAGTTTGCCACACAGCTGCTTGAGGTTAAG
GGTGAGGCCCAGAGCCCACATTAAACCTGAGAAAGGCGGTGATGCGAGCT
TGTAGTCCCACTGCTGAGGAGGTGGAAACAGGAAGATCTCTGGGGTCCCT
AGTCAGCCAACATGGTCTAATTGCTGATCCTCATGAGCCAGTGAAGGAGA
TCCTGTCTTACAAACAAACAAACAAACAAAAACAAGGTATACAGCTGCTG
GGGTGAGACACCTGAAGTTGATCTCTGGCCTCTATAAATATATACGTGTA
CGTACGTGTGCGCGTGCGTGTGCGTACACGTCCTGCATCCTCCCCTGCAC
GTCCCTCCCCCCGAAATAAAACATTGCATAAGGCTTGGGACACGGTTTCA
CTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b06.g1 MSMg01no088_b06.g1 CHROMAT_FILE:
MSMg01no088_b06.g1 PHD_FILE: MSMg01no088_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:26 2005
         (302 letters)



>mm_chrX_7125918_7126619
          Length = 702

 Score =  499 bits (258), Expect = e-146
 Identities = 286/302 (94%), Gaps = 13/302 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaggcagtttgccttgggagacgatcatcttcactcagggtgaccaacaacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 214 tatgaaggcagtttgccttgggagacgatcatcttcactcagggtgaccaaaaacaaaaa 273

                                                                       
Query: 61  acaacaaaaaaaaaccaaaaacaaaaaaaaaccctatgtaccccagactaatgttcagtt 120
           | |||    |||||||        ||||||||||||||| | ||||||||||||||||||
Sbjct: 274 a-aac----aaaaacc--------aaaaaaaccctatgtgctccagactaatgttcagtt 320

                                                                       
Query: 121 catgattcccctgcctcagtctccaaacagcaccatctcacacttttaatacttttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgattcccctgcctcagtctccaaacagcaccatctcacacttttaatacttttcagt 380

                                                                       
Query: 181 tctgtatcatatacgttcccttcatttcaataaatctaggtatctggggagatagctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtatcatatacgttcccttcatttcaataaatctaggtatctggggagatagctcag 440

                                                                       
Query: 241 ttggcagtttgccacacagctgcttgaggttaagggtgaggcccagagcccacattaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcagtttgccacacagctgcttgaggttaagggtgaggcccagagcccacattaaac 500

             
Query: 301 ct 302
           ||
Sbjct: 501 ct 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)