BAC Information

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BAC

Clone NameMSMg01-089A14
ChromosomeX (Build37)
Map Location 90,040,061 - 90,040,436
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A14.T7 (MSMg01no089_a14.b1)MSMg01-089A14.TJ (MSMg01no089_a14.g1)
ACCAG307638AG307639
length779686
length of high quality
(start - end)
294 (138 - 431)403 (56 - 458)
definitionCHROMAT_FILE: MSMg01no089_a14.b1 PHD_FILE: MSMg01no089_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:42 2005CHROMAT_FILE: MSMg01no089_a14.g1 PHD_FILE: MSMg01no089_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCCCCNCCCCCCCCCNCCTNCTCCCCCCTCTCTTTCCTCTTCN
TNNTCTCTCCNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCCACACTTACCCGCCAAGGAACCATTG
AAGAAGATGAAGTGAAAAGATTCTAAGGGTCAGAAGAACAGATAGCCTGC
TGTAAGACTGTGTCTCTTAGGAATGTCAGAAGCTACACCCATAAAGCCTC
CACACCATGACTGCCTAAACAGGAACTGAACAAGAACAACAACATAGGCA
TGCTAAAATGGATGTGGAAAAGCTCTTGAGGGCTCAACCCTACAGAAATA
ACTAAAGAATATTAAGGAACACTGAGAGCAGGAGAAATAGTTTTTCCCAG
GGAAGAGCACACAAATTAGTTATCCAGTGCTTATCGTCAGCCCAGAACGC
ATACATATACAGACTGAGCAAGTTATGTTTAAGAGCGTTTGTGTGTGTGT
TTGTATGAAATTAAAACTATTGAAAATGAAACCATAAATGTGAAAGAGAG
CAATGCTGTATATTATAGGAAGTTTTAGAGGGAACAACAGGAAGAGGCAA
TGATGGAATTATACTTTTAATAATCCTTCACCTAACCATTTATAGCTACA
TTTAATATATCAAAACACCCCTCAGGTTTGTCTACTGGTCAGTTCTAATG
TAGGCATTTTTCCCATATGATTCTAGCTTATGTCTAGTTGACCCCAATTT
ATTACTATTTCCATCGATCCCCGTGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGAGGTAAGCTAAAATGTGATAACAATAGTCACAACAATATTCAT
AGTAAAAATAATATGGTATTAAATATCAGTGAAAACAGAATTATCCAGTC
TGAATGTTATTTATGTTGTTCATATATTATCTTCTCTTATAACAGTTACA
CTCACAAAAGTAGACATTTTGAGAAAAGAAATTATTTATTAGATATTTTC
TCCATTTATATTTCAAATACTATCCCCAAAGTCCCCTATGCCTTCCCCCT
GCTCTGCTCCCCAATCTACCCACTCCCTGGTATTCCCCTGTACCGGGGCA
TATGATCTTTGCAAGACCAAGGGTCTCTCCTCCTAGTGATGACTGACTAG
GTCATCCTCTGCTACATATGCAGCTAGAGACACAGCTCTGGGGGTGGGGT
ACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACCCCTTCA
GCTCCTTGGGTACTTTCTCTAGCTCTGTCATTAGGGGATCTGTGTTCCAT
CCTATAGATGACTGTGAGCATCCATTTTTGCATTTGCCAGGTTCTGTCAT
CACTTCACAATATACCGTTTTATCAGGCTCTTGTTAAAATGCTCTTGTTG
CTATTACTTACACCGCCTGGTTCTGATGTTCGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a14.g1 MSMg01no089_a14.g1 CHROMAT_FILE:
MSMg01no089_a14.g1 PHD_FILE: MSMg01no089_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:43 2005
         (403 letters)



>mm_chrX_90040061_90040863
          Length = 803

 Score =  675 bits (349), Expect = 0.0
 Identities = 370/377 (98%), Gaps = 2/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggtaagctaaaatgtgataacaatagtcacaacaatattcatagtaaaaataatatg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaggtaagctaaaatgtggtaacaatagtcacaacaatattcatagtaaaaataatatg 317

                                                                       
Query: 61  gtattaaatatcagtgaaaacagaattatccagtctgaatgttatttatgttgttcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtattaaatatcagtgaaaacagaattatccagtctgaatgttatttatgttgttcatat 257

                                                                       
Query: 121 attatcttctcttataacagttacactcacaaaagtagacattttgagaaaagaaattat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttatcttctcttataacagttacactcacaaaagtagacattttgagaaaagaaattat 197

                                                                       
Query: 181 ttattagatattttctccatttatatttcaaatactatccccaaagtcccctatgccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 196 ttattagatattttctccatttatatttcaaatactatccccaaagtcccctatgccctc 137

                                                                       
Query: 241 cccctgctctgctccccaatctacccactccctggtattcccctgtaccggggcatatga 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cccctgctctgctccccaacctacccactccctggtattcccctgtaccggggcatatga 77

                                                                       
Query: 301 tctttgcaagaccaaggg-tctctcctcctagtgatgactgactaggtcatcctctgcta 359
           |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct: 76  tctttgcaagaccaagggct-tctcctcctagtgatgactgactaggccatcctctgcta 18

                            
Query: 360 catatgcagctagagac 376
           |||||||||||||||||
Sbjct: 17  catatgcagctagagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)