BAC Information

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BAC

Clone NameMSMg01-089C06
ChromosomeX (Build37)
Map Location 80,819,780 - 80,966,912
singlet/doubletdoublet
Overlap geneDmd
Upstream geneTsga8
Downstream geneLOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C06.T7 (MSMg01no089_c06.b1)MSMg01-089C06.TJ (MSMg01no089_c06.g1)
ACCAG307715AG307716
length787782
length of high quality
(start - end)
230 (132 - 361)152 (135 - 286)
definitionCHROMAT_FILE: MSMg01no089_c06.b1 PHD_FILE: MSMg01no089_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:51 2005CHROMAT_FILE: MSMg01no089_c06.g1 PHD_FILE: MSMg01no089_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,966,688 - 80,966,912)(80,819,780 - 80,819,930)
sequence
CGGTTTTCTTGTTTGCCCGTTTTCTTTTCTTTCTTTCCTCNNCCNNCCGN
CCCTAATACNCCNTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCACATGCTTACCCTTTAAAAAAAAAAGTTT
CAAGGTAGGATTAATGGCTCTTGGACACTACAGAATTTCCCAATTTCTGA
TCAAATTCAAATGAGTAGTATTATTTGACAGAATCATTGTTGAATGTAGA
AAACATGAATGGTTAATGAGTAGCCCAATTTAAGAATGCTATGTACATTT
AGACAAAACAGAAGTATTGTTTTTTATCTTTTCATCATAATTTTGATACT
TCTATATGTTAGCACAAAAAACGTATTGTTCCATGGCTTCCTGATATTAA
TGTTTGTTTGTAGCAACCATTATTCAATATATTATGTGCCCGCCCGCCCA
ATTATTTGCTTTTTACCATTTTCTTGTTCATTTGCCCCTAAATAAAGAAC
ACTCATCTTGTTTACTTTACTTCGGCAATCAAACTTCCCACCTTTTGAGT
ATACGTCTTCTAAAGTTCTTTCATAATCCCATTACTATAGGACCCCTGTC
ATTGAATACGATATGTATTTTTCTTATACTCTCTGTGACGATTTTCTGAA
CCTTCTTTGTGTCCCACTTACTACATCCTTGTTCTTTTTCCTAACTTTTA
TAATTGTTTGCTTCACGTTTCTGCTCAGCCCTTTTTCCTTTTTTTCGCCA
CTATTTTAACCCTTATCACTTCATCTCCCTATCCCCG
TTTTTTTGTTGTTGTGGGTTTCGTCCTGTTATCCTCCTNCCCCNCCCCTT
TCNNNCTTTTCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCAAATGATTTCT
CAAATGATAATTAGAGAAGTTTCTGTGACAATCACGATATTGGACATTTG
TTTTCTCTTTTCCCATCTGCTGAGTCACAATTCTCAGACAGTAGAGGGTA
TAGTGGTTTCTCCAATCCTTATAGTTTATACTTAACGCTTTGCGAGGAGA
GATCATACCTGTATTGCACAAAATACTGTATTTGCTACTTCTTTTCATTG
GCTATTTGTAAAGGGGTAGACTATTTGCCTTGTTTACCTGCATAACCTGT
TAAATCTGAGCCCCATCATTTTTTTTTACCCCCCCCTCCCCCACCCCTTT
AACTTATCTGTGTACTGCACGCTGTTTCTTCCTACGAAATCATGAAAACC
TGTTTTTGAATAAGGCCACGTCCTAACATCTGTCATAGTAATAACACCTT
ATTCTTGATTGAAAAAAAAACACCGTTAAGCCTTTACACTGCTTGCTCAT
CCCCGCTAATAACTGACTTATTTCTCGCTAGTTTTTCCAACAACACGTGC
CCTGTTTTTTCACCTTCCTTTTCTATGTTCTTTTACTCGCCTCCCGTTTT
TCGCGCAATTGACCACCCGATATCTTTATTTTTTCCCTTCTTCCCTCTAT
TTTTCCCCACTCTTTGTCCCTTTTTCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c06.b1 MSMg01no089_c06.b1 CHROMAT_FILE:
MSMg01no089_c06.b1 PHD_FILE: MSMg01no089_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:51 2005
         (230 letters)



>mm_chrX_80966483_80967112
          Length = 630

 Score =  397 bits (205), Expect = e-115
 Identities = 220/225 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   aaaaaaaaaagtttcaaggtaggattaatggctcttggacactacagaatttcccaattt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 430 aaaaaaaaaagtttcaaggtaggattaatggctcttggacactacagaattttaaaattt 371

                                                                       
Query: 66  ctgatcaaattcaaatgagtagtattatttgacagaatcattgttgaatgtagaaaacat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgatcaaattcaaatgagtagtattatttgacagaatcattgttgaatgtagaaaacat 311

                                                                       
Query: 126 gaatggttaatgagtagcccaatttaagaatgctatgtacatttagacaaaacagaagta 185
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaatggttaaggggtagcccaatttaagaatgctatgtacatttagacaaaacagaagta 251

                                                        
Query: 186 ttgttttttatcttttcatcataattttgatacttctatatgtta 230
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgttttttatcttttcatcataattttgatacttctatatgtta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no089_c06.g1 MSMg01no089_c06.g1 CHROMAT_FILE:
MSMg01no089_c06.g1 PHD_FILE: MSMg01no089_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:51 2005
         (152 letters)



>mm_chrX_80819580_80820131
          Length = 552

 Score =  253 bits (131), Expect = 3e-72
 Identities = 146/151 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccaaatgatttctcaaatgataattagagaagtttctgtgacaatcacgatattgga 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 201 ctgccaaatgatttctcaaatgataatttgagaagtttctgtgacaatcaagatattgga 260

                                                                       
Query: 61  catttgttttctcttttcccatctgctgagtcacaattctcagacagtagagggtatagt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 catttgttttctcttttcccatctgctgagtcacaattttcagacagtagagggtatagt 320

                                          
Query: 121 ggtttctccaatccttatagtttatacttaa 151
           ||||||| ||||||||| |||||||||||||
Sbjct: 321 ggtttcttcaatccttagagtttatacttaa 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)