BAC Information

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BAC

Clone NameMSMg01-090B20
ChromosomeX (Build37)
Map Location 128,825,186 - 129,007,344
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670449, LOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B20.T7 (MSMg01no090_b20.b1)MSMg01-090B20.TJ (MSMg01no090_b20.g1)
ACCAG308430AG308431
length701703
length of high quality
(start - end)		638 (41 - 678)300 (74 - 373)
definitionCHROMAT_FILE: MSMg01no090_b20.b1 PHD_FILE: MSMg01no090_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:10 2005CHROMAT_FILE: MSMg01no090_b20.g1 PHD_FILE: MSMg01no090_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,825,186 - 128,825,820)(129,007,046 - 129,007,344)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAGGTTTATTCTTGTCTGGTGTTACTGTTTATGAAACCCTATAGCAAGT
TAATTGATAATTTACATATTTACATAGTAACTAACAAACTATATAACCAC
CTTGATGAGGCACTAGTTAGAAGTTGCTTTGATTATCTGAAGTTCTGCTT
TCAATAAAAGCATCAATAGAGCTGACAGCCATAAATATGTTAATGCTGAT
CTCCACGTGGCTCATTTCCAAATGCGATTATCGCCTTTATTATGAATAGA
TTTTGAAATCAAATCATACAATATTAATTTTTATTTTATATTTAGATGTA
GGAATAAGAACACTCTTGAAGAAGTCAAAATGCACAATCAGAAGTTGTAT
TAATTTTACTTCCCCATTATAAATCAGTACAAAATAGATCAGTTTACTTT
TAGTCTTCTACCATTGGCATCAGATAGGACAGTAATTTTGGTAGCTACAT
CCAACAAAGTAATCATATTCTTGATGGCTCCCATCATAGATATTTCCAAG
TTTACTCAACGTGACACATATAGCACTCAGTTTCCTTCATGGACATTCTT
CATTCCTACTCATCTTAGCATTTAAAAGTGTCTGATACCATTTTAAAAGG
AAAGAGGAATATAAACAGGATAGATTCCACCCCAGTTAACAAGACACCAA
C

CGATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACCCTATGATGTGTAATGAAACTCTA
TTGACCCACATTTGAAGGCCACACATACTTATGTTTTACTTGACAGCTTA
GGCTGGGATTCTTTTTAAGGATTGGATGAATTTTAGGACAACTTCCCAGT
TCCTATTTCAGTGCTTAAAATAAGAATGATTTTCTTCCAGAGAGCCAATA
GACATGCACACTTAAACTACCTGCATATCTTCATGCTTCCTTTATGTTAA
CAACACTTAATGTGACAGGTTATGAGTGAGGAGAGTTGGGAGAAGAAGCC
AATATTGAATTGCTTGTAAATAGCCTAACGCATCAGTACTCAATACTGTG
TAATATAAAAGCAAGTACTGACATTATTATTCTACATGTTGGACTCTCTG
ACAAGTTCATGAAGCAAATGAAACACATCATAAGTGAAGAACCATGAGTA
ATGAGTCTCATCAGAACTACTGCATCTGGCTATCTATTTGCTGTTAATGA
TTATTTGAGAATTGTTCTTTGAAATGTAGAGTAATTATTCTCAGGAATTG
TACAGCTAACCTTCCGTAAACACCACACACACACACACACACACACACAC
ACACACACACACACACATACACTTTTTAATGCTACCTGTATCTTATCCAC
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b20.b1 MSMg01no090_b20.b1 CHROMAT_FILE:
MSMg01no090_b20.b1 PHD_FILE: MSMg01no090_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:10 2005
         (638 letters)



>mm_chrX_128824983_128826020
          Length = 1038

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaggtttattcttgtctggtgttactgtttatgaaaccctatagcaagttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaggtttattcttgtctggtgttactgtttatgaaaccctatagcaagttaa 263

                                                                       
Query: 64  ttgataatttacatatttacatagtaactaacaaactatataaccaccttgatgaggcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgataatttacatatttacatagtaactaacaaactatataaccaccttgatgaggcac 323

                                                                       
Query: 124 tagttagaagttgctttgattatctgaagttctgctttcaataaaagcatcaatagagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagttagaagttgctttgattatctgaagttctgctttcaataaaagcatcaatagagct 383

                                                                       
Query: 184 gacagccataaatatgttaatgctgatctccacgtggctcatttccaaatgcgattatcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagccataaatatgttaatgctgatctccacgtggctcatttccaaatgcgattatcg 443

                                                                       
Query: 244 cctttattatgaatagattttgaaatcaaatcatacaatattaatttttattttatattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctttattatgaatagattttgaaatcaaatcatacaatattaatttttattttatattt 503

                                                                       
Query: 304 agatgtaggaataagaacactcttgaagaagtcaaaatgcacaatcagaagttgtattaa 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 504 agatgtaggaataagaacactcttgaataagtcaaaatgcacaatcagaagttgttttaa 563

                                                                       
Query: 364 ttttacttccccattataaatcagtacaaaatagatcagtttacttttagtcttctacca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttacttccccattataaatcagtacaaaatagatcagtttacttttagtcttctacca 623

                                                                       
Query: 424 ttggcatcagataggacagtaattttggtagctacatccaacaaagtaatcatattcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggcatcagataggacagtaattttggtagctacatccaacaaagtaatcatattcttg 683

                                                                       
Query: 484 atggctcccatcatagatatttccaagtttactcaacgtgacacatatagcactcagttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atggctcccatcatagatatttccaagtttactcaacgtgacacatatagcactcagttt 743

                                                                       
Query: 544 ccttcatggacattcttcattcctactcatcttagcatttaaaagtgtctgataccattt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccttcatggacattcttcattcctactcatcttagcatttaaaagtgtctgataccattt 803

                                              
Query: 604 taaaaggaaagaggaatataaacaggatagattcc 638
           |||||||||||||||||||||||||||||||||||
Sbjct: 804 taaaaggaaagaggaatataaacaggatagattcc 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no090_b20.g1 MSMg01no090_b20.g1 CHROMAT_FILE:
MSMg01no090_b20.g1 PHD_FILE: MSMg01no090_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:10 2005
         (300 letters)



>mm_chrX_129006846_129007545
          Length = 700

 Score =  571 bits (295), Expect = e-167
 Identities = 298/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccctatgatgtgtaatgaaactctattgacccacatttgaaggccacacatacttatg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 taccctatgatgtgtaatgaaactctattaacccacatttgaaggccacacatacttatg 440

                                                                       
Query: 61  ttttacttgacagcttaggctgggattctttttaaggattggatgaattttaggacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttacttgacagcttaggctgggattctttttaaggattggatgaattttaggacaact 380

                                                                       
Query: 121 tcccagttcctatttcagtgcttaaaataagaatgattttcttccagagagccaatagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcccagttcctatttcagtgcttaaaataagaatgattttcttccagagagccaatagac 320

                                                                       
Query: 181 atgcacacttaaactacctgcatatcttcatgcttcctttatgttaacaacacttaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgcacacttaaactacctgcatatcttcatgcttcctttatgttaacaacacttaatgt 260

                                                                      
Query: 241 gacaggttatgagtgaggagagttgggagaagaagccaatattgaattgcttgtaaata 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gacaggttatgagtgaggagagttgggagaagaagccaatattgaattgcttgtaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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