Query= MSMg01no090_d02.b1 MSMg01no090_d02.b1 CHROMAT_FILE:
MSMg01no090_d02.b1 PHD_FILE: MSMg01no090_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
(483 letters)
>mm_chrX_13313699_13314581
Length = 883
Score = 905 bits (468), Expect = 0.0
Identities = 477/480 (99%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttaatgacc-tcaagaaaagcaagatacagcaaccaaggatccctctgctat 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctttaatgacaatcaagaaaagcaagatacagcaaccaaggatccctctgctat 263
Query: 64 catgaaaaataatgtacgtactgagagaagtcacacagttcaagggccagcctatggata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgaaaaataatgtacgtactgagagaagtcacacagttcaagggccagcctatggata 323
Query: 124 aataaaaaagacacaaacatcccaacatgaactaagccaagcatttacaacaggagtaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aataaaaaagacacaaacatcccaacatgaactaagccaagcatttacaacaggagtaat 383
Query: 184 aaataattatataaaatcacattatagcaacaacccaagtattaataattagaaatgggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaataattatataaaatcacattatagcaacaacccaagtattaataattagaaatgggg 443
Query: 244 acacagaaaaatatatggcatggactgcgggcaggtggggacagggaaggatcaggttgt 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatagaaaaatatatggcatggactgcgggcaggtggggacagggaaggatcaggttgt 503
Query: 304 aggaagatgggatgaaggggaaaaagataagtataaattaaagagaaataaatcaacaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggaagatgggatgaaggggaaaaagataagtataaattaaagagaaataaatcaacaaa 563
Query: 364 ggaaaataaggagaagcaagaaggaaaagagaggcaacgtatgaagcagtgtggtgataa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaaaataaggagaagcaagaaggaaaagagaggcaacgtatgaagcagtgtggtgataa 623
Query: 424 ttgatatttagaattataaagtcaagagatagtatatggtgttaggtacaaaaggaacag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgatatttagaattataaagtcaagagatagtatatggtgttaggtacaaaaggaacag 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_d02.g1 MSMg01no090_d02.g1 CHROMAT_FILE:
MSMg01no090_d02.g1 PHD_FILE: MSMg01no090_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
(488 letters)
>mm_chrX_13398679_13399565
Length = 887
Score = 930 bits (481), Expect = 0.0
Identities = 486/488 (99%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 1 aaggtgatttctcaacttaatatattaagttttaatgcttcgctatatgtgtagggcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaggtgatttctcaacttaatatattaagttttaatgcttcgctatatgtgtagggcata 628
Query: 61 tctggctggctatgtaagtacatttatcttaaaatatctcaatatagttaggcttattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tctggctggctatgtaagtacatttatcttaaaatatctcaatatagttaggcttattta 568
Query: 121 cataggtgtctgatagaatgttagctatattaaatatttagttgtttggcaagcaatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cataggtgtctgatagaatgttagctatattaaatatttagttgtttggcaagcaatttg 508
Query: 181 acttttgtgcatatttatgtgcatattcatacataaacacactgacagagacagacagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acttttgtgcatatttatgtgcatattcatacataaacacactgacagagacagacagac 448
Query: 241 agacacacacccctaaccagaagccagaggagtaacatgagaatatgtttcagatatatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agacacacacccctaaccagaagccagaggagtaacatgagaatatgtttcagatatatc 388
Query: 301 tgtaatgaagaatttgcttctggtttttgtgtaatattgcatttttaccttttgctacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtaatgaagaatttgcttctggtttttgtgtaatattgcatttttaccttttgctacat 328
Query: 361 gttttaatttttggtcattttcctgagaagttgttacttccactttcaacgtcttanaaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 gttttaatttttggtcattttcctgagaagttgttacttccactttcaacgtcttaaaaa 268
Query: 421 aataaattttacagaggaatatgaaatgtatttaaagcttttggttttttttccttgtat 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 aataaattttacagaggaatatgaaatgtatttaaagcttttgg-tttttttccttgtat 209
Query: 481 tactctct 488
||||||||
Sbjct: 208 tactctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
