Query= MSMg01no090_i24.b1 MSMg01no090_i24.b1 CHROMAT_FILE:
MSMg01no090_i24.b1 PHD_FILE: MSMg01no090_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:45 2005
(319 letters)
>mm_chrX_14471262_14471981
Length = 720
Score = 565 bits (292), Expect = e-165
Identities = 310/316 (98%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatcagttacag-acagctaatggttatcaacttagtgacaagtctttcagtg 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctcatcagttagagcacagctaatggttatcaacttagtgacaagtctttcagtg 461
Query: 64 aagaaaaatttgagtaccataataaccacccattctcgtactttgtctccatcattcccc 123
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aagaaaaatttgagtagtataataaccacccattctcgtactttgtctccatcattcccc 401
Query: 124 gcactgagccaaatgggctcctttcctttctcaacagattaagtataatcccaccacaca 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 400 gcactgagccaaatgggctcctttcctttctcaacaaattaagtataatcccaccacaca 341
Query: 184 ccaggaatgttgtccttctcttgtgtcccctggagcacttttcctcagataccttctttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccaggaatgttgtccttctcttgtgtcccctggagcacttttcctcagataccttctttg 281
Query: 244 acaatgcatcatttaactcaagacacctcaggaaaaatactcgctatggcaacccatcct 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 acaatgcatcatttaactcaagacacctcaggaaaaaaactcgctatggcaacccatcct 221
Query: 304 caaataacaatgccca 319
||||||||||||||||
Sbjct: 220 caaataacaatgccca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_i24.g1 MSMg01no090_i24.g1 CHROMAT_FILE:
MSMg01no090_i24.g1 PHD_FILE: MSMg01no090_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:45 2005
(216 letters)
>mm_chrX_14372278_14372900
Length = 623
Score = 327 bits (169), Expect = 3e-94
Identities = 205/219 (93%), Gaps = 9/219 (4%)
Strand = Plus / Plus
Query: 6 agagc-agag-cccaggaacccag---gcgccgctgctgggacctaaactgtgtctgcta 60
||||| |||| ||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 206 agagccagagtcccaggaacccagtgtgggt-gctgctgggacctaaactgtgtctgcta 264
Query: 61 gaagagcgataagcactctcacctgctgacc--tttctcctgcatatttctagacatttt 118
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 gaagagcgataagcactctcacctgctgacccatttctcctgcatatttctagacatttt 324
Query: 119 ttaaagactagtttt-aaacaaaataagctagaaagctcatataaaagcagagaaagctt 177
||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
Sbjct: 325 ttaaagactagtttttaaacaaaataagctagaaagctcatagagaagcagagaaagcat 384
Query: 178 ctattcctttagagttaaaatgagtcattccatagcctt 216
|||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctattcctttagagttaaaatgagtcattccatagcctt 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 623
Length adjustment: 9
Effective length of query: 207
Effective length of database: 614
Effective search space: 127098
Effective search space used: 127098
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
