BAC Information

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BAC

Clone NameMSMg01-092H13
ChromosomeX (Build37)
Map Location 89,729,980 - 89,730,441
singlet/doubletsinglet
Overlap geneMageb18
Upstream geneEG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092H13.T7 (MSMg01no092_h13.b1)MSMg01-092H13.TJ (MSMg01no092_h13.g1)
ACCAG310152AG310153
length706701
length of high quality
(start - end)
328 (50 - 377)462 (75 - 536)
definitionCHROMAT_FILE: MSMg01no092_h13.b1 PHD_FILE: MSMg01no092_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:20 2005CHROMAT_FILE: MSMg01no092_h13.g1 PHD_FILE: MSMg01no092_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGCTCTACACCACATTTTTTAATGGAGTTATTGA
TTTTTTGGAGTCCACCTTCTTGAGTTCCTTATATATATTGGATATTAGTC
CCCTACTGATTTAGAACAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTTGATTCTCAATCTTACAACACAAGCCATTGCTGT
TCTATTCAGGAATTTTTCCCCTGTGCTGATGTCTTCGAGGCTTTTCCTCA
CTTTTTCCTCTATAAGTTTCACTGTCTCTGCTTCTATGTGGAGTTCCTTG
ATCCACTTAGATTTGACCTTACCACAAGGAGATAGGAATGGATCAATTCA
TATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGACAA
GGCTGTCTTTTTTCCACTATATGGTTTTAGCACCCTTGTCATAGATCATG
TGATCTTAGGTGTGTGGGCTCATTTCTGGGTCTTCAATTCTGTTCCATTG
CTCTACTTGTCAGTCGCTATACCACTAACATGCACTTTTTATCACAACTG
GCTCTGTACTCTCACTTTTATGTCCTGCCTTGCTGACCTCCCCCACATGT
TCTTTA
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCCAGCCCCACTTTACTGTGCACA
ATTCTAACACTAGGAAAAGAGGCAACTATCAAAATCATTCTTCACTTTTC
TAAGTTAATCTCATGCAATCCCAATATTTGCCTTAGTATTCATGCCTTAT
AACCACAACTATCAGCCTACTTTTTGCATGTATGTAGGGGGTGCAGAGAG
TGTGCTTGTGCATGTGTATAAATGCTGTAAGGGGATATCAAGATGTTCTA
AATTGTTTCCCCGCATAAAGTACAGTGAAAGGAAGGAGGAATATAAGATA
AAGGGGGGTGGAGGGAGCCCAAACATGTTTAGTTGTTATTTCCTCAAAGT
TAAATACAATGCATGTAATAAAAGAGATAGAAATTCAGTGAGGTTAGATG
AAAAAATGATTTAAACTCGGCAATTTCTATGTTCTGAATTAATCCTTTAC
AAATTCATTAAGGATGTATAAACGCCAGTGCAACAGCATTGGGAAGCCTT
ATGGAAGACACATGGGTAATGAGAGCTCTACCTCATAAATGAGGCTACTA
TAAAAATAGTACCATTATATAAAAGGGCTTATAAAAGTGAGCTTTCTCTA
TATATAGCTCTTCTATCATGAGGAGAGTTACCACTCTACCCTTCCAGAGG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_h13.g1 MSMg01no092_h13.g1 CHROMAT_FILE:
MSMg01no092_h13.g1 PHD_FILE: MSMg01no092_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:20 2005
         (462 letters)



>mm_chrX_89729780_89730641
          Length = 862

 Score =  886 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccagccccactttactgtgcacaattctaacactaggaaaagaggcaactatcaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cttccagccccactttactgtgcacaattctaacactaggaaaagagggaactatcaaaa 260

                                                                       
Query: 61  tcattcttcacttttctaagttaatctcatgcaatcccaatatttgccttagtattcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattcttcacttttctaagttaatctcatgcaatcccaatatttgccttagtattcatg 320

                                                                       
Query: 121 ccttataaccacaactatcagcctactttttgcatgtatgtagggggtgcagagagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttataaccacaactatcagcctactttttgcatgtatgtagggggtgcagagagtgtg 380

                                                                       
Query: 181 cttgtgcatgtgtataaatgctgtaaggggatatcaagatgttctaaattgtttccccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtgcatgtgtataaatgctgtaaggggatatcaagatgttctaaattgtttccccgc 440

                                                                       
Query: 241 ataaagtacagtgaaaggaaggaggaatataagataaaggggggtggagggagcccaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagtacagtgaaaggaaggaggaatataagataaaggggggtggagggagcccaaac 500

                                                                       
Query: 301 atgtttagttgttatttcctcaaagttaaatacaatgcatgtaataaaagagatagaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttagttgttatttcctcaaagttaaatacaatgcatgtaataaaagagatagaaat 560

                                                                       
Query: 361 tcagtgaggttagatgaaaaaatgatttaaactcggcaatttctatgttctgaattaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtgaggttagatgaaaaaatgatttaaactcggcaatttctatgttctgaattaatc 620

                                                     
Query: 421 ctttacaaattcattaaggatgtataaacgccagtgcaacag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttacaaattcattaaggatgtataaacgccagtgcaacag 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)