GAAAAAAAAAAGAAAAAAATATTGGTTTTTTTTTTNNNNATAAGTAAAAA
ATGANNTCTAGANNNTTTAAGAAGANNTCNGATAGAAAGAGGNNGGAGNT
TTNCCTTTCTAAAAACGAAGAAAAGGNNNNNNNNNNNNNNNNNNNNNNNT
TTTTCCAAAAAAAAGAGGGGAANNTTTTTAAATAAAAAAATAAAATAAAA
AAATAAATAATATAATAATTAATTTATTTTTTTTATTAGATATAAAAAAA
AGGGGAGGAAAGTTNTATATAAGAAAATATATATATTAATATAATAATAT
AAAATTAAATTTAAAATTAAAATAATAAAATAAATTATAGATGTGGAATA
GTTTTTTTTAAGAAAATATTAGTTATAATAAAATAAAAAAAATTTTTTTT
TTTTCCCACCCCCCCCCACTTTTAAATTTTTATAATAATATAATTATTTT
TCCCCAAAAAAAAAAAAAAAATAAAAGTGGGGGGGGGGGGAATAAATAAA
TCAAATAATAAATAATATAATAAATCCGAAAAAAATATATAAATGTTAGA
ATTAAAAATATATTATAATTTATATTATATAAAAATATATATATATAAAT
AACATATAACTATAAATGAAAACAAAATTATAGATAATAAAAATATAAAA
ACATAAATATCCTCTATTTTAATTAATAAATAAATAAAAATAATATATAT
TTAAACTCTATTTCTTAAAATATCTAATATATAGCACTAACAATGACATC
ATAGATAACAATATAAAAAATTATTAATT

CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGGGTAAGGATGGAGCCAAGTGAG
TCTGCTGCGTTTGCAATTCCTTCCTTAAGCAGAGATGGACATTTGAATAC
TAAGTACTGTGTTGGGATTTGCCTTTAAGCCAAAGTCAATTAAGCCCTTT
TGCCTAATGCTTTGCCTAAAGCCTCAGCTCTTTTTCTTTTGAAAATTCAG
TGACTCTTTTAGTAGCTTCCGTCCTCCCTTCTCCCCCTCTCAGCCTTCCT
ATGGGGATCTAGAGCTGCTCTGAAGAATTCCCCTGTGCATAGTGATCCCC
ACCTGTATGGCTGACCAATAGTGTTTTCTAGGCATGCCTTCTCTCCACAC
CCACCATGGACTCAGCTTTTCTGTTGCCTCGCTTCTCCTCAAGGTCATGT
CCAACCTTATGAGCAGCACTTTTCTTCCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTTCTTTCTTTCCTTCTAAGAATTATTTATTTATCT
TATGTATATGAGTAATCTTTCTGACTGTCTTCAGACC

Query= MSMg01no094_j20.g1 MSMg01no094_j20.g1 CHROMAT_FILE:
MSMg01no094_j20.g1 PHD_FILE: MSMg01no094_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:20 2005
         (590 letters)



>mm_chrX_158997760_158998750
          Length = 991

 Score =  818 bits (423), Expect = 0.0
 Identities = 456/467 (97%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggggtaaggatggagccaagtgagtctgctgcgtttgcaattccttccttaagcaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 594 ctaggggtaaggatggagccaagtgagtctgatgcgtttgcaattccttccttaagcaga 535

                                                                       
Query: 61  gatggacatttgaatactaagtactgtgttgggatttgcctttaagccaaagtcaattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gatggacatttgaatactaagtactgtgttgggatttgcctttaagccaaagtcaattaa 475

                                                                       
Query: 121 gcccttttgcctaatgctttgcctaaagcctcagctctttttcttttgaaaattcagtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 474 gcccttttgcctaatgctttgcctaaagcctcagttctttttcttttgaaaattcagtga 415

                                                                       
Query: 181 ctcttttagtagcttccgtcctcccttctccccctctcagccttcctatggggatctaga 240
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcttttagtagcttccatcctaccttctccccctctcagccttcctatggggatctaga 355

                                                                       
Query: 241 gctgctctgaagaattcccctgtgcatagtgatccccacctgtatggctgaccaatagtg 300
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 354 gctgctctgaagaattcccctgtgcatagtgattcccaactgtatggctgaccaatagtg 295

                                                                       
Query: 301 ttttctaggcatgccttctctccacacccacc-atggactcagcttttctgttgcctcgc 359
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| 
Sbjct: 294 ttttctaggcatgccttctctccatacccacccatggactcagcttttctgttgcctcgt 235

                                                                       
Query: 360 ttctcctcaaggtcatgtccaaccttatgagcagcacttttcttcctttctttctttctt 419
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 234 ttctcctcaaggtcatgtccaaccttatgagcagtacttttctttctttctttctttctt 175

                                                          
Query: 420 tctttctttctttctttctttctttctttctttctttctttctttct 466
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tctttctttctttctttctttctttctttctttctttctttctttct 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 24
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)