BAC Information

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BAC

Clone NameMSMg01-095L17
ChromosomeX (Build37)
Map Location 85,145,616 - 85,145,908
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1, LOC667876
Downstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095L17.T7 (MSMg01no095_l17.b1)MSMg01-095L17.TJ (MSMg01no095_l17.g1)
ACCAG312576AG312577
length696785
length of high quality
(start - end)
293 (50 - 342)292 (140 - 431)
definitionCHROMAT_FILE: MSMg01no095_l17.b1 PHD_FILE: MSMg01no095_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:51 2005CHROMAT_FILE: MSMg01no095_l17.g1 PHD_FILE: MSMg01no095_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATATCCCAGAAATCCGCGGAATTCCATATGATTTACATTGAAG
AAAATATTGGATTGATAAAATGGTATTTATGAAATTCTCAAAGAACTAAA
CCTGTTATGAAGAAAAAGTACAAGTGAGATAGTTGGGAAAGGTAGCTGCC
AGAAAACCTGATGTCAGTGGTATCTGTTGGTATTCTGTCTGGACTCCACC
CCCACAGTTACCTGAACACAACCAGATAGGCCTGGCCCATTATAAAAGGG
CTGTTAGAAAGAGAAAAACATCAGATGGACGTCTAGATGGGACTATATTC
TGGAATCTATGCCTCACACCCATATTCAGTGGTTAGTTTTGATTATAATA
AAAGGCCCTGCTTGCCCCCTCCTCTTACTCTCTTACTCTTGCCTCTCTCT
CTTGACTTTGACTCACTTCCTTCCCCTCTCTCCCCATTCCTTTCTCCCCT
CTCTCCTCATGGTTATGGCCAACTTCTAATTCTCTACTCTCTCCCTTCCT
CTGCCTTTCTCGGCCTCTACTACTCTCTTAACTCCCTTCCCAATGCCCTG
AATATTCTATACTATACCATCTTGTGGTTGGTCCCTCAGGTGGTAGGGAT
GAATTGACATACGCCCTCCAAGGAAAACCCTTTTCCCATACCTCATCACC
CCTCCTTAAGAACATAATCCTATACCTCTTTATCTTTTTATAATCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNCCCCCCCCNNNN
NTTTTTAAAANNTCGACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATATGCAT
TAAGATCAGCTTGTGACACTAACATCACTTTGCTTTGGACCTCATGGCCC
TCACCTCTATCGCTACACAGCCCAGGTTCAGTTCCTTGTGCTCGTACTTA
TTAGATCTCAGACCTTTTTCATGTTACTTTGAAATTCTGTGCCCCAGTTT
CCTCATCCTTTAAAATCCAGTAGTGAAAATATGCTTAATAAAGTTGTCAT
AATCCGTAAGTGAAATGAGCTTTGTAGAATCCCGACAAAACTCCCCACAA
AACCTGTTAGTAAAGGAATTATGGAAAGATTTACTAGCGACTCCCCACAA
CTTTGATTGCCTTTGTGAAGGGAGAAGGCAGGGCAAGAATTGATTGAGAA
TTGTAAGTTTCATTTAAGTAAGTTGGCTTTAAATATCAGGAACTTTAGTC
TACCAGCACCATATTCTGTATTAGCCCAAGCACTACTAAAATGAGGGCGG
ACTTTAATATGGCTGGCTAAGTCAGTGTCAATAAGATTGAGCACTCTGTG
ATTGGTAAACCCTCAAAAAACTGGACAGAGAGCTATTGAAAGTCCAATTA
TTAAAACCTACATTTGCTCCAATGAAAAGCCGATAGGTCTTTGGGAAAAT
CACTGTGAAACAAAGTGAAATAATCCAGGTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_l17.b1 MSMg01no095_l17.b1 CHROMAT_FILE:
MSMg01no095_l17.b1 PHD_FILE: MSMg01no095_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:51 2005
         (293 letters)



>mm_chrX_85145416_85146108
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaatattggattgataaaatggtatttatgaaattctcaaagaactaaacctgttatg 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 201 gaaaatactggattgataaaatggtatttatgaaattctcaaagaactaaatttgttacg 260

                                                                       
Query: 61  aagaaaaagtacaagtgagatagttgggaaaggtagctgccagaaaacctgatgtcagtg 120
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 261 aagaaaaagtacaagtgagatagttggtaaaggtagttgccagaaaacctgatgtcagtg 320

                                                                       
Query: 121 gtatctgttggtattctgtctggactccacccccacagttacctgaacacaaccagatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctgttggtattctgtctggactccacccccacagttacctgaacacaaccagatag 380

                                                                       
Query: 181 gcctggcccattataaaagggctgttagaaagagaaaaacatcagatggacgtctagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctggcccattataaaagggctgttagaaagagaaaaacatcagatggacgtctagatg 440

                                                                
Query: 241 ggactatattctggaatctatgcctcacacccatattcagtggttagttttga 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactatattctggaatctatgcctcacacccatattcagtggttagttttga 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)