BAC Information

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BAC

Clone NameMSMg01-096B17
ChromosomeX (Build37)
Map Location 70,056,035 - 70,056,153
singlet/doubletsinglet
Overlap genenone
Upstream gene2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
Downstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B17.T7 (MSMg01no096_b17.b1)MSMg01-096B17.TJ (MSMg01no096_b17.g1)
ACCAG312862AG312863
length776750
length of high quality
(start - end)
30 (145 - 174)120 (75 - 194)
definitionCHROMAT_FILE: MSMg01no096_b17.b1 PHD_FILE: MSMg01no096_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005CHROMAT_FILE: MSMg01no096_b17.g1 PHD_FILE: MSMg01no096_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATCTCTTTTCCCTAAGTGCGAAGATTTTGTTGAGAGAATGAAT
TAGCTATCCATCCCAACAGAAAAAAAAAACCCACCAGCATATACAAATCC
ATTGAAAGGAAGTGACTCATGTGATAGTGGGGGCCACTTGACGAGGTCTA
CATTGCAGACCACAGCCATAAAGAATAGCAAGCCGGGCCCTTTATATATG
GACCTATGCTGCAAACCACCACAACCTCACATGATTGGCTGAGGTTGAGG
GTCTAGGATCATCTCCCTATTTTAGAGTTAATTCATGATGGACCTGAATC
ACTACTGCAGAGTGTTTCATAGTCACCACCTAGATTACTTACCACTCCCT
CCCCTATTTTGATTCATACTGACCCACCCACCCCAAAAGTGTAGGCATTT
GCCTCTGGCTCCAAGTCTATCCCCTGAATCTCCAGACACCAGCCGCATGT
CCTGCCTCGAGATCCACTTCTGACCCCTAGCTACTCTACAGCCACTCCCC
TTCCCCCCGCCCTGCCTCCACCCTCATACGCCATGTTCATCGCCCTAAGC
TGCCCATTTGCCCCTTCCCTGATGGCCTGCCTAACCCCCTTCCACGGTTC
CTTATCCCCCGTTCTCCCTCCCGCCTCCTTACCCCTTACCTCCCCTGGCC
TTACCTTAATCCCCTGGCCACTGATTTCTTACCCCGGCTATTCACCGCCT
TTCCCTATCACCCCACCGTCCCCCCN
ATTATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCCAAATTCTTGAAAAAAAAAAACACTATCCCAGAAG
TCACCTACACCTTGTTCTCCCCATGTCCCTTCCTGGCCACAGGTGTACAT
GGGGTACAAGTTGCAGAGTGGTTGCACATGTGACTCTCCTAAGGAGCAAG
GGTTCTAGACATGTTCTCATCAGCGAGTTGTGCGTGCCCAACAGCATGCC
ACCCTACTTGGGTGTCATTGGAGACATGATCTCACAGTATTTGTGGTATC
CAGTTGGGCTGGGTTTCTTACAGTCTGGCTTACCTCCTGAAGTCAGTGAT
GTGCACAGTGACTGCTTTTAATCACCACACAGGATTTGTCCCTAACCTGC
CCCGGGCCATCTATCAAAAACCATCGCGAAGCTCTTCATATAATCCCCGT
CTGTAACGTTCCACCCAGTGCCGCATGTGTCTCAATCTTACTTACGCTCA
CGAACATTATATTGAACTGAATTTCTCCTTTGCACTCCTGAGCGCGTGCT
CCTTCAAAAAACCCCCTATATCCCATTCCACCAAACCCCACATGCCTCTT
TTAATCCTGCATTTTTTTTCCCTGCGTTCCCTGTGCCCAACCACCCTCCT
GTTCTCTCTCCCCTTCTGCCCCTATTTTCCGCAGCCGGTCCATATCCCTT
CCTGCTATACAAACCTGCCTCGATCTCCATTCCTTACACTCCCACTCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b17.g1 MSMg01no096_b17.g1 CHROMAT_FILE:
MSMg01no096_b17.g1 PHD_FILE: MSMg01no096_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:20 2005
         (120 letters)



>mm_chrX_70055834_70056353
          Length = 520

 Score =  230 bits (119), Expect = 2e-65
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaaaaaaaacactatcccagaagtcacctacaccttgttctccccatgtcccttcctg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaaaaaaaacactatcccagaagtcacctacaccttgttctccccatgtcccttcctg 261

                                                                      
Query: 62  gccacaggtgtacatggggtacaagttgcagagtggttgcacatgtgactctcctaagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gccacaggtgtacatggggtacaagttgcagagtggttgcacatgtgactctcctaagg 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)