BAC Information

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BAC

Clone NameMSMg01-098D19
ChromosomeX (Build37)
Map Location 35,790,871 - 35,791,397
singlet/doubletsinglet
Overlap geneLamp2
Upstream geneRhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112
Downstream geneLOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D19.T7 (MSMg01no098_d19.b1)MSMg01-098D19.TJ (MSMg01no098_d19.g1)
ACCAG314470AG314471
length692682
length of high quality
(start - end)
482 (35 - 516)510 (54 - 563)
definitionCHROMAT_FILE: MSMg01no098_d19.b1 PHD_FILE: MSMg01no098_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005CHROMAT_FILE: MSMg01no098_d19.g1 PHD_FILE: MSMg01no098_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACCTT
ACCATGTGTTTTAGGGGGATGGAGAGATGGCCCAGAGAATTCTGAGCACC
TAAGTTAGATTCCTAGCACCTATATGAAGGCTCTACATGTAACTACAGTC
CCAGGGCATCTGATGCCCTCTCCTAACATCAGCATGCTCTTGCACACATG
TGGTACACATACATACACTCAGTTGCACATACATACTGATAAATATACTT
TTAAAAACACATTTAGGACTGGTGAGATGGCTCAGCGGTTAAGAGCACTG
ACTGCTCTTCTGAAGGTCCTGAGTTGAAATCCCAGCAACCACATGGTACC
TCACAACCATCCATAACGAAATCTGACGCCCTCTTCTGGTGTGTCTGAAG
ACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAAAA
CCCACACATTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTG
AGTTCGAGGCCAGCCTAGCCTACAAAGCGAGTTCTAGGACAGCCAGGACT
ACACAGAGAAACCCTGTCTCCAAAAACAAAAATTCGGGGGGCGTATCCTA
CCATGTTATTCAGAGCCCTGAAACCATGGCAGCGTTGTACAGAGCCCCAG
GCTAGATCTTCCTGGATTCTTCATAACTAAAACCATAAAGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGGCTAGGTAGGGCTATACATGAGACTCTAAAAATAAAAATATATTC
TGGGTAATAAGTCTCTGAGAGTCTGCTATATTATTCTCTCTGGGTTTTTA
ATATGTATTTTAATCATAAAAACATTTTTTAAGTAGCAGCTTCAAAGTTA
CTTCAATTATTAAATGCCTAAAACTTAGCATTTCAGAGCAGGGCAGTGGT
GGTGCACGCCTTTAATCCCAGCACTCCGAAGGCAGAAGCAGGAGGATCTC
TGTGGGTTGAAGGCCAGTATCATCTAGACTGAGTGCCACGATAGCAAAGG
CTGTACAAAGAAACCCTGTCTCAGAAAAACCAACAAAGCAAAGCAAAGCA
AAGCAAAGCAAAGCAAAACAAAAGTAGCATTTCAAACTACTAAATTATTT
CAAAGGCAATTCTCTAAAGTGTACATAAAGAAAGTATTTTAAATTCAAAA
GGTTTGATACTTTATTATTCAGAAGACAGTCACAGAAAAAGTCAACTACT
TGTTTATAATAAAGACCAGGAAAGGGGTTAGCATGTTAGTGATTTTATCT
AACATGTCTGACTAAAGCCATCTTCCTTTAACAGTTGCCTCCGCGGTTGA
GGGATGGGTTACATCATCCCGACCATTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d19.g1 MSMg01no098_d19.g1 CHROMAT_FILE:
MSMg01no098_d19.g1 PHD_FILE: MSMg01no098_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
         (510 letters)



>mm_chrX_35790688_35791597
          Length = 910

 Score =  926 bits (479), Expect = 0.0
 Identities = 508/527 (96%), Gaps = 17/527 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctaggtagggctatac-atgagactctaaaaat-aaaaatatattctgggtaataag 58
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 184 aggctaggtagggctatacaatgagactctaaaaataaaaaatatattctgggtaataag 243

                                                                       
Query: 59  tctctgagagtctgctatattattctctctgggtttttaatatgtattttaatcataaaa 118
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctctgtgagtctgctatattattctctctgggtttttaatatgtattttaatcataaaa 303

                                                                       
Query: 119 acattttttaagtagcagcttcaaagttacttcaattattaaatgcctaaaacttagcat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acattttttaagtagcagcttcaaagttacttcaattattaaatgcctaaaacttagcat 363

                                                                       
Query: 179 ttcagagcagggcagtggtggtgcacgcctttaatcccagcactccgaaggcagaagcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttcagagcagggcagtggtggtgcacgcctttaatcccagcactccgaaggcagaagcag 423

                                                                       
Query: 239 gaggatctctgtgggttgaaggccagtatcatctagactgagtgccacgatagcaaaggc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaggatctctgtgggttgaaggccagtatcatctagactgagtgccacgatagcaaaggc 483

                                                                       
Query: 299 tgtacaaagaaaccctgtctcagaaaaaccaacaaagcaaagcaaagcaaagcaaagcaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtacaaagaaaccctgtctcagaaaaaccaacaaagcaaagcaaagcaaagcaaagcaa 543

                                                                       
Query: 359 agcaaa---------------acaaaagtagcatttcaaactactaaattatttcaaagg 403
           ||||||               |||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agcaaagcaaagcaaagcaaaacaaaagtagcatttcaaactactaaattatttcaaagg 603

                                                                       
Query: 404 caattctctaaagtgtacataaagaaagtattttaaattcaaaaggtttgatactttatt 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caattctctaaagtgtacataaagaaagtattttaaattcaaaaggtttgatactttatt 663

                                                          
Query: 464 attcagaagacagtcacagaaaaagtcaactacttgtttataataaa 510
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 664 attcagaagacagtcacagaaaaagtcaaccacttgtttataataaa 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)