BAC Information

Click to search

BAC

Clone NameMSMg01-099D18
ChromosomeX (Build37)
Map Location 64,488,289 - 64,488,541
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk2, LOC666824, LOC627734, EG666828
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099D18.T7 (MSMg01no099_d18.b1)MSMg01-099D18.TJ (MSMg01no099_d18.g1)
ACCAG315218AG315219
length890753
length of high quality
(start - end)
---255 (76 - 330)
definitionCHROMAT_FILE: MSMg01no099_d18.b1 PHD_FILE: MSMg01no099_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005CHROMAT_FILE: MSMg01no099_d18.g1 PHD_FILE: MSMg01no099_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATGAAAAAGACAAATATACAAATAAGGACACGAAACCATTATTTGGCGG
CGGGTTCGCGGAGCGCATATCCGGAACGATCAGTTAAAGGCCCACCTATA
CGGGCACTAACGAGTATATCGCCCGTTTCGCCCGCTCCGTTCGCCGCCTT
TTTTTGCCGCCCTTCGCCCCGCCTTTTGAAATTACGTGCCTCTCGCGGGG
GGATTAATATCACGCGATTATTTAACCAGTACACCGTACTATATATATCC
CGGGCAAAAATATGTGTGCGCGATATTTGGAGTAGAACCATAATATATGA
TACAACTTATCGTCGCACGGTATTAATTAAAGCGATTAGGTAAAAGGGCC
GAAAGAAAAGATTAACAAGACGAAGAATAAACAGCGATACCGCATAATTT
TCTATCCGTATATATTATTTCCGTCCATTTTTTTATTTACCCCTTTTAAT
TAGTAGCCAGTACAGAGGAAGAATAAGAGACGAGAAACAAATGGAATTAA
AATGATGCACGCGCTGTATAAATGAAAGTGGAATCTGAAACGAAACACAA
AAGGGAAGAACAATAAACGAACAAATGGCATATTGATATATATAAAATGT
TTCGATTAATAACGACTGTTGTGCGATTATTTTCGTGTGCGCGAATAATT
CGTTCGACGGGTCATTATATTTCCGTATATTACGCGGACACGATTTATGA
GCACGGGCACAATATTTTTCACCGGCGCCTTCTTCACCATGTTTTATTTA
TCTAATTCCCGCCCCAATACGGCTTCCGCAACCTTTTTTTCCCGCGCGCG
TGTTTAAATAACTGTCCTCAAGATATTAAGTTTAATATACACACTACGAT
ATAATATATTCGGCACTGTAACGAGGTGCTTTATAATCCG
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAACCCAGCTATGGTTTTCAAGC
AAACCACTTGACCACACTTTATATCATTACTGCAGAAGGGGGCATCCCAG
TTGCATAGTTTCAAAGAATTGAAAAGATTATGACAAAGCTCCATGCAATG
AGTCTTCCAAGCAGCTTGCTTGAAAGGCACATTATATTTCCCTGTTTGCA
AGGATAGAATTTCTGTCTTCTTCAAAGCAAGCCTTTCTTCCAAGGAGATG
GTGTTGGAGCTCTAAGTTTTCCTACTATTCTCAAACATAACGAGCAAATC
TAATAATAAAATAAATTAAAGTCACCTATGCTTATTAAAGCACTATCTTT
AAAAACGCCTGTGTAGCATGACCTACAATTATCCATGTGTGTTCTAGAGC
AGACTAGATGATTATTTAGCAACAATGTTAGAAAAGCACAATAGGGTTTA
TCACACAATAATATATACCGAAATACCCAGGAGAGCAAGCTAAAATGTAG
ATTCTGATAGCGCATGGGCTAGGCTGTTATTTTCCATGTTTTACACACCC
CCCTATATAATGCAGACCTTCGCTTCACATTTTCGAGTTTATTATATTAT
TCCCCCCCTTTTTCCAATCCCCCCCTGCTCTCTTTAACCCCTTTTATTTT
CCCCCTAATCTCCTAACAATATGCCTATTTTCCCATTCCCCTTTTTTTCT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_d18.g1 MSMg01no099_d18.g1 CHROMAT_FILE:
MSMg01no099_d18.g1 PHD_FILE: MSMg01no099_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:37 2005
         (255 letters)



>mm_chrX_64488089_64488744
          Length = 656

 Score =  466 bits (241), Expect = e-136
 Identities = 250/253 (98%), Gaps = 1/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaacccagctatggttttcaagcaaaccacttgaccacactttatatcattactgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ataaacccagctatggttttcaagcaaaccacttgaccacactttatatcattactgcag 394

                                                                       
Query: 61  aagggggcatcccagttgcatagtttcaaagaattgaaaagattatgacaaagctccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagggggcatcccagttgcatagtttcaaagaattgaaaagattatgacaaagctccatg 334

                                                                       
Query: 121 caatgagtcttccaagcagcttgcttgaaaggcacattatatttccctgtttgcaaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caatgagtcttccaagcagcttgcttgaaaggcacattatatttccctgtttgcaaggat 274

                                                                       
Query: 181 agaa-tttctgtcttcttcaaagcaagcctttcttccaaggagatggtgttggagctcta 239
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 273 agaattttctgtcttcttcaaagtaagcctttcttccaaggagatggtgttggagcttta 214

                        
Query: 240 agttttcctacta 252
           |||||||||||||
Sbjct: 213 agttttcctacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 656
Length adjustment: 9
Effective length of query: 246
Effective length of database: 647
Effective search space:   159162
Effective search space used:   159162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)