BAC Information

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BAC

Clone NameMSMg01-099F13
ChromosomeX (Build37)
Map Location 121,308,347 - 121,308,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099F13.T7 (MSMg01no099_f13.b1)MSMg01-099F13.TJ (MSMg01no099_f13.g1)
ACCAG315304AG315305
length697678
length of high quality
(start - end)
344 (47 - 390)213 (59 - 271)
definitionCHROMAT_FILE: MSMg01no099_f13.b1 PHD_FILE: MSMg01no099_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:46 2005CHROMAT_FILE: MSMg01no099_f13.g1 PHD_FILE: MSMg01no099_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAATTTACCCCAAGTGTACCTGATGACTCCTTGAGCCACTGAG
AGTGATTTAAGCTCCACTTCAAGCATGGGGGGAATGTGTGAGTCTTCTTG
GTGCTGAAGGAATAATTCTGAGGTTTCTGTGTCAGAAACAGGACTTGGAG
GACCCATTGACAGAGTGATAATGTTTATGTATCCACAAACAATCTATAAA
GGATGCCATCTTTTAGAGGCAGAAAGGTTCACACCATGTTGGGGAAAGTA
GAAATGCCAAAGACTCTTGTATCTGTACAAGATCAAGGGTCGATTTGGAG
AGGAGAGAAGGTCTGAATATTTCATTATCGAGGCTTCCTGGGAACCTAGA
ACACACATATCATGCAGGCCATGCAACAGCTTAATCAATCTCCAGCATGC
TAGGAGGCACTTTCCAGCTAGTTCTCCTGATAAATCTGCTGACTACTTCT
GAAAATGGCAAGGCTTTCTCGTTTCTGCTGGCTAACTTAATGTCTATGCC
CTGGTTTTATGAATTTGCTGGTTACTCTTAACCTCTGACACCTCTTGCAC
CCGTTTTCTGATCCCCGCATACAGTCTTTATTTCGAGGCTTTTATTCTTA
CGCACTCGGTGATCCTTACATCATGTTAGTCCATCTGTCTTGTATCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGGGTGTCTGATATTATCCAGAGGCCTGAGCAAGGGGCTCT
TCTCAGAGTCTTTCATTTTGGGGCTTGCCTTGGATCAGTGTGACCACCCA
TATCTCCAAAAACCCACTTGGAGGTGAAATTTTTTGTCTAAAATTATTTC
TTTGAGCTGGCGAGTTTTAGTCCTGAAACTGGCATTAGCTACGTTTTGTG
AGAAACAGTGACTTTGCCTTGGGGTCAGGCACTGACTGTGAACAGCAGAC
ATGCTATAATCAAAGGCTGCTGCTTGCTCTGAGGGACACCGTGAGTGATG
TCGACGACTCCAGGATCCCGTCTGGAGCAGATATTGAACTTTCCCGATCT
TCTGCATTTCTAAGTTGATTTTGTTTGTACGTTAGAAGATGGGCATTTGT
CAGTGTGTATTTGTTTTTTTGCGCCCGTTTCCAGGTATTTGTCACTGTTT
GTGTGTGTTTTGCGCCTGCTTATCATGATATTGCAAGGATTGTCTTGCCC
TTTTGCCCTCTAAGCTTCGATTCCCCCCCCTGTATTGCATTCTCCCCCTC
TTTCCATCCCCTCCCCTCTCCGATATACTACTTCCTCCTCTTCCCATTCT
CCTCGACTCCCCCGACCCGTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_f13.b1 MSMg01no099_f13.b1 CHROMAT_FILE:
MSMg01no099_f13.b1 PHD_FILE: MSMg01no099_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:46 2005
         (344 letters)



>mm_chrX_121308143_121308886
          Length = 744

 Score =  526 bits (272), Expect = e-154
 Identities = 323/340 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaatttaccccaagtgtacctgatgactccttgagccactgagagtgatttaa 64
           |||||||| |||||  | ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 205 gaattcctgatttagacaaagtgtacctgatgactccttgagccattgagagagatttaa 264

                                                                       
Query: 65  gctccacttcaagcatggggggaatgtgtgagtcttcttggtgctgaaggaataattctg 124
           |||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||
Sbjct: 265 gctccacttcaagcatggggagaaagtgtgagtcttcttattgctgaaggaataattctg 324

                                                                       
Query: 125 aggtttctgtgtcagaaacaggacttggaggacccattgacagagtgataatgtttatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aggtttctgtgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgt 384

                                                                       
Query: 185 atccacaaacaatctataaaggatgccatcttttagaggcagaaaggttcacaccatgtt 244
           ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct: 385 atccacaaacaatctataaagaatgccatcctttagaggcagaaagattcacaccatgtt 444

                                                                       
Query: 245 ggggaaagtagaaatgccaaagactcttgtatctgtacaagatcaagggtcgatttggag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ggggaaagtagaaatgccaaagactcttgtatctgtacaagatcaagggttgatttggag 504

                                                   
Query: 305 aggagagaaggtctgaatatttcattatcgaggcttcctg 344
           ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 505 aggagtgaaggcctgaatatttcattatcgaggcttcctg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)