BAC Information

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BAC

Clone NameMSMg01-099G13
ChromosomeX (Build37)
Map Location 46,903,214 - 46,903,450
singlet/doubletsinglet
Overlap genenone
Upstream geneSuhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2, 1100001E04Rik
Downstream geneLOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323, EG665816, Olfr1324, LOC100041788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099G13.T7 (MSMg01no099_g13.b1)MSMg01-099G13.TJ (MSMg01no099_g13.g1)
ACCAG315352AG315353
length729712
length of high quality
(start - end)
210 (46 - 255)428 (75 - 502)
definitionCHROMAT_FILE: MSMg01no099_g13.b1 PHD_FILE: MSMg01no099_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:53 2005CHROMAT_FILE: MSMg01no099_g13.g1 PHD_FILE: MSMg01no099_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGCATTCCTCCCCATTGCAGTAAGACAATAAGAAATACTTAAA
GTCATACATCTGTAAATAAAGAAGTAAACCACTCAATTACAGATAATTAT
GTAAAATTTTTAGGGGTGAGTGTGTGTGTGTGATAGAGAGAGAGAGAGAA
AGAGAAAGAGAGAGATGCAAGAATAAATGTTTATGTGGTGTGTATCTGTG
TGTAGAAGACAGAGGTCAGATCATGTGTCTTCCTCTATCACTCTCTTCCC
TAATTTTTCAGATATTTCTCACTGAACCTGGAGACTGGCTGGCGGGCCTC
TAGGATTCCTCCTGTTACTCACCAGAGATAGGACTATAAAGACTCATAAT
AGTCACTATGATCAGCTTTACCTAGATGCTAGAAGATCTGAACTCTGTCC
CTCATGTCAGGTATTTTACCATCTGATCTATCTCCCTAGTTACTACCTCT
AATTCTTACAAGACATAACCCTATATCCAATATATACTACCCTTAGTCCT
AGATTCTTATGTGTTCTACGCCCTCATTATATACGACCTCTTTTTCCTCA
GAGTTTCATCTTTTCTTTTTTTCACCCCGTACCTATACTTACCTTATCCC
CCCCGATTTTATCCTTGAACCAGTCTCTTTGTTTCGCCCTGACCTGTTTT
ATTACTTCTTCGCCCTCTCTTTTTTTCCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAACATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGCACATCTACACAATGGAGTACTACTTAGCTATTACAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGTAACTGGAGGGTATCATCCTGAGTG
AGGCAACCCCTTCTTATTGAAACTCCCACCATATGCATCCACCGACTCAG
TGGATATTAGCCCCCACATCCAGTGTCCCCACAGATATAACACTACCTTT
CGCTAATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_g13.b1 MSMg01no099_g13.b1 CHROMAT_FILE:
MSMg01no099_g13.b1 PHD_FILE: MSMg01no099_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:53 2005
         (210 letters)



>mm_chrX_46903112_46903721
          Length = 610

 Score =  331 bits (171), Expect = 2e-95
 Identities = 206/237 (86%), Gaps = 30/237 (12%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttggcattcctccccattgcagtaagacaataagaaatacttaaagtcataca 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaattcttggcattcctacccattgcagtaagacaataagaaatacttaaagtcataca 280

                                                                       
Query: 64  tctgtaaataaagaagtaaaccactcaattacagataattatgtaaaatttttaggggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctgtaaataaagaagtaaaccactcaattacagataattatgtaaaatttttaggggtg 220

                                                                       
Query: 124 agtgtgtgtgtgtgatagagagagagagaga----------------------------- 154
           |||||||||||||||||||||||||||||||                             
Sbjct: 219 agtgtgtgtgtgtgatagagagagagagagagagagagagagagagagagagagagagag 160

                                                                    
Query: 155 -aagagaaagagagagatgcaagaataaatgtttatgtggtgtgtatctgtgtgtag 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aaagagaaagagagagatgcaagaataaatgtttatgtggtgtgtatctgtgtgtag 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)