BAC Information

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BAC

Clone NameMSMg01-099K21
ChromosomeX (Build37)
Map Location 53,496,293 - 53,496,619
singlet/doubletsinglet
Overlap genenone
Upstream gene4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K21.T7 (MSMg01no099_k21.b1)MSMg01-099K21.TJ (MSMg01no099_k21.g1)
ACCAG315560AG315561
length724696
length of high quality
(start - end)
470 (45 - 514)245 (61 - 305)
definitionCHROMAT_FILE: MSMg01no099_k21.b1 PHD_FILE: MSMg01no099_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:16 2005CHROMAT_FILE: MSMg01no099_k21.g1 PHD_FILE: MSMg01no099_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAACTTTCATAACATAACCAGTTCTAATTCCACCACAGTTAATG
CAATAGCCAACATTTGGCCTTAATTATTACAGATTGATTATTTTTGCTTG
TTTATTGTGTATAAGAATAACTCAGTGAAATTCTCCCTTTCTCCCATATG
GATTCAGTCCTTGAAATCCAGATGCCAGGGAGCAAAAAAAGAAATTTGAC
TTGCTGAGCCTTCTTGCCAGCTCTGATTTTGCCAACTTTAATGCTTATAG
CAGAAACATGGCCTAAAGTCTTAATATTTGTATTTATTTATTCAAATTCA
TTTGTTTATTTAATATATTCGTGCGCGCCTATTCTCATGCCACAGTACAC
AGGGTTTTTGGGCATTGCGGTTTTTAGTGACTTTTTTGGGGTTCTATTTT
TTTTAAGGTTATTTTAGAGTTTTACGCTCTTTTTTTCATTAGTTTGTTTT
ATATTTTGTTTCTCCGCTTCACTTGTTTTTTTAGTACCACTTCTTGAATT
CTCTTTATAAGCTCAGACTTTTCTTTATGGCGTGAAAAGTCTTAATTTTG
CCCTTCTTACGATCTTTTCTTCTAACGCTCTTTTCTTCCAATTATACACC
TCTTTATGGTCTCCTTCCATCGTCTGCGTTCTCTCTCTCTTTTTCCTACA
CCGTTCGCTCGTCTTTTTCTCTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTT
AAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGA
AGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAG
TAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTT
GTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCC
TCTATCTTTTGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCTGTGGTC
AGAGCAGTCTCTGTAGGCTAGCTCTCCTCTCTCAGGGAATGTGTACAGTT
ATCTGGTGTTTGGACCTCTTCCTGGCTGAAGGTGAAGGCCCACAACAGGA
TCTTTCCCAGAAGCTGTGTTGTTTTGGCCAGTAAGGTGTTCTGCTGCTTG
GAGTCCATTATGTCTCCGCCTCCCATACTCTGTTGGCTCTTGTTTAGAAG
GATGCTGGTCGTCTGGATCTGATGTTGGTGCCGCCTCAGAAGCTTCTGTG
CTTCTTGCTTTCACCGCTGCTGCCTTTTTTTTATTCGACGATGTCGCCCT
CCCCTTAATCTCTTCCCACTCTCCTCTTTTGTCTCCACCACACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k21.b1 MSMg01no099_k21.b1 CHROMAT_FILE:
MSMg01no099_k21.b1 PHD_FILE: MSMg01no099_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:16 2005
         (470 letters)



>mm_chrX_53496146_53497014
          Length = 869

 Score =  368 bits (190), Expect = e-106
 Identities = 295/332 (88%), Gaps = 10/332 (3%)
 Strand = Plus / Minus

                                                                       
Query: 31  cagttctaattccaccacagttaatgcaatagccaacatttggccttaattattacagat 90
           |||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 474 cagtcctaattctaccacagttaatgcaatagccaaaatttggcctttattattacagat 415

                                                                       
Query: 91  tga-ttatttttgcttgtttattgtgtataagaataactcagtgaaattctccctttctc 149
           | | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 414 t-atttatatttgcttgtttattgtgtataagaataactcagtgaaattcaccctttctc 356

                                                                       
Query: 150 ccatatggattcagtccttgaaatccagatgccagggagcaaaaaaagaaatttgacttg 209
           |||| ||||||||| ||||||||||||| || |||| ||  ||| | |||| |||||| |
Sbjct: 355 ccatgtggattcaggccttgaaatccaggtggcaggcagggaaacaggaaaattgactgg 296

                                                                       
Query: 210 ctgagccttcttgccagctctgattttgccaactttaatgcttata--gcagaaacatgg 267
           || |||||||||||||||||||||||||||| |||||||||  |||  ||||| | ||||
Sbjct: 295 ctcagccttcttgccagctctgattttgccatctttaatgc--atactgcagaca-atgg 239

                                                                       
Query: 268 cctaaagtcttaa--tatttgtatttatttattcaaattcatttgtttatttaatatatt 325
           |||||||| | ||  |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 238 cctaaagt-tcaaattatttgtatttatttattcaaattcatttgtttatttaatgtgtt 180

                                           
Query: 326 cgtgcgcgcctattctcatgccacagtacaca 357
            ||| | || ||||||||||||||||||||||
Sbjct: 179 tgtgtgtgcatattctcatgccacagtacaca 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space:   395140
Effective search space used:   395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)