BAC Information

Click to search

BAC

Clone NameMSMg01-100A09
ChromosomeX (Build37)
Map Location 132,498,424 - 132,498,949
singlet/doubletsinglet
Overlap genenone
Upstream geneNxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352, EG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9
Downstream geneLOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1, Tceal3, Tceal1, Morf4l2, BC065397, Glra4, LOC100041122, Plp1, Rab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100A09.T7 (MSMg01no100_a09.b1)MSMg01-100A09.TJ (MSMg01no100_a09.g1)
ACCAG315823AG315824
length714704
length of high quality
(start - end)
527 (44 - 570)339 (55 - 393)
definitionCHROMAT_FILE: MSMg01no100_a09.b1 PHD_FILE: MSMg01no100_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005CHROMAT_FILE: MSMg01no100_a09.g1 PHD_FILE: MSMg01no100_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAACTACCTTATGAATATCATTGAGTGGAACTGAAGTGAATACAAA
CTCATCCTACCGAGATTTCTAAAATTCTGGGTAGAAAAGGGAAGAGTTCC
AGTATAAACAGCTACTGCCAAGAGTCTAAAAATGAAATACACCATGATAT
TATGCAGAAATGAAACTTCTATATGGAAGCAGCCAAAAGATAATTTTTAT
TTAAGTCTCTAGATTGCTACAAACTATGCAAACAAAAATCTATCTTTGTG
ACTTATTGTAGTTGATTTTCTAATTCTGTAATTTATTTTATAGTCATTAG
CTGAGATTCTGCTGTAAATTACTCTATTCATTAGTAATAGACAAGTGTGT
TAGCCTAGGAACCCACACATGAATGCTAAATTCTTTTGCAGTATTTTCAA
TTTTTCAAACAGTGAATTTCTTTTCCCAAGTCCCCCAAGGAAGCTAAATT
GGTCTATTACTTTGTTAATCATCTTTATTAGCTGTTGCTATTTCTATATT
GGATGTTTTAATCTATTTCAGTCCCTAGACATTAAAAATGTTCTATTTTT
TTATGCTGTGGGGATTCCTTTATCTTAGCTTCTGTTCTTTTTGAGGACTT
ACTGTAATTTAGCTTACTTTAGGCTTAATTGACCCATTCTTTGTCCCAAT
AGTATGATCTACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACAAAGAAATAAGAGCATTGAAGATGATTCAAGCTGAAATGAGGAT
GGCATTGAAAAACCCAAAGATGGAATTAGAATACCCAAGGTAAAGACTTA
CAAGTACAATGGATCAACTGGAAAGATAGACTTAAATTAAAAATTAGAAA
ATCTATACAAAATATGCAGAATATGAACAATTACTTTTTAAAAATATAGG
AAAACATACAGGAAATGTGAAACACCATGAAAAAAAAACAAATATTCAGA
TATATAGGAATAAATAAGAGAGCAGAATCCAGGTTAATGACATGGATCAG
ATTTTCTTTTTTTTTTTTTTCAGATTTTCAACAAGATCAATAAGCACAAA
GAAAATTTCCTCAAACTAAGGAAAAATGCCCCTACACACAAAAAAATCCC
TAATGCATGGTATATTATGGTATATTATATCCAAAGCAAATACAGGAAGC
AATATTTCAGATTACAGAGATGAATGAGCATAGCTAAGAGTCTGTGGGAA
AAAATCAAAGCCATACACCATAAAGTACCACCAAGAACACAAACACCCCG
TTTCAACCACAAAATGACTCCCATCCCCACACCCCTTTCAATAACACCCT
TAAATATTAATGAACTAACCTCCTTCAATGAAAAGACCCCGACCTTTTGA
ATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_a09.b1 MSMg01no100_a09.b1 CHROMAT_FILE:
MSMg01no100_a09.b1 PHD_FILE: MSMg01no100_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:46 2005
         (527 letters)



>mm_chrX_132498223_132499149
          Length = 927

 Score =  969 bits (501), Expect = 0.0
 Identities = 520/529 (98%), Gaps = 6/529 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcggaattctgaactaccttatgaatatcattgagtggaactgaagtgaatacaaactca 61
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcggaattctgaactacattatgaatatcattgagtggaactgaagtgaatacaaactca 261

                                                                       
Query: 62  tcctaccgagatttctaaaattctgggtagaaaagggaagagttccagtataaacagcta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcctaccgagatttctaaaattctgggtagaaaagggaagagttccagtataaacagcta 321

                                                                       
Query: 122 ctgccaagagtctaaaaatgaaatacaccatgatattatgcagaaatgaaacttctatat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgccaagagtctaaaaatgaaatacaccatgatattatgcagaaatgaaacttctatat 381

                                                                       
Query: 182 ggaagcagccaaaagataatttttatttaagtctctagattgctacaaactatgcaaaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaagcagccaaaagataatttttatttaagtctctagattgctacaaactatgcaaaca 441

                                                                       
Query: 242 aaaatctatctttgtgacttattgtagttgattttctaattctgtaatttattttatagt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaatctatctttgtgacttattgtagttgattttctaattctgtaatttattttatagt 501

                                                                       
Query: 302 cattagctgagattctgctgtaaattactctattcattagtaatagacaagtgtgttagc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cattagctgagattctgctgtaaattactctattcattagtaatagacaagtgtgttagc 561

                                                                       
Query: 362 ctaggaacccaca---catgaatgctaaattcttttgcagtattttcaatttttcaaaca 418
           |||||||   | |   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctaggaa---agataacatgaatgctaaattcttttgcagtattttcaatttttcaaaca 618

                                                                       
Query: 419 gtgaatttcttttcccaagtcccccaaggaagctaaattggtctattactttgttaatca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtgaatttcttttcccaagtcccccaaggaagctaaattggtctattactttgttaatca 678

                                                            
Query: 479 tctttattagctgttgctatttctatattggatgttttaatctatttca 527
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctttattagttgttgctatttctatattggatgttttaatctatttca 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)