BAC Information

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BAC

Clone NameMSMg01-100K10
ChromosomeX (Build37)
Map Location 61,174,205 - 61,174,788
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100K10.T7 (MSMg01no100_k10.b1)MSMg01-100K10.TJ (MSMg01no100_k10.g1)
ACCAG316293AG316294
length687682
length of high quality
(start - end)
75 (200 - 274)585 (74 - 658)
definitionCHROMAT_FILE: MSMg01no100_k10.b1 PHD_FILE: MSMg01no100_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:35 2005CHROMAT_FILE: MSMg01no100_k10.g1 PHD_FILE: MSMg01no100_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTACAATACCGTTTTGATATACAGCATACAGAAAGAAGAAAAAT
AAAATTCTTCATTTGGAATCTATAATAACATCACCTCAGTCTGATGCCAT
GAAGTCTAACAGAAATGTAATCAGTACACTCATGCTGATCAGGGCGCCGA
TATTAAGAGATAGATTTCTGGGAATGAAAACTGTTGACATGCCCCATGAT
ATATAAATAGAAGAATAACATCGAGATATAGATAACATGGAAAAAAAGTA
CAAATACCAATGCATCTCTTCTTGTAGAAAAGAAACAAATTGAATTTAGA
GACATCAGTTACAAGTTTAGCTTACTAAGATTCTCAATTCACGCTAAATG
TACTAATTCCCTCTGATGTATGCTTGAGAAATTAGCTGTATGTCTATCTG
GTTGTTTATTTGACTAGGAAAGGGAATGTGCTAAGTGCCTCCTTTTAATC
CACACTATCTAGGGTTGGCGTCTACCAGTTGCCTACACGTTACTTTCCTC
CCTCCTTTAATTCAACCTCCTCTTATCCCCTCTTCTGCAGGCGAAACCCA
GATAACACTACGCCATGATCACGACGACACTTTATTTCCCTCTCAGTTAC
CTCTTGCAAATACCCCACTTTTAAATCGCCCCCTCCC
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTACTTTTTAATTACATTAAACTCA
GAAAAGCTGAATTTACCTTTGTATAATAATTTTTTCTTTGTGTTCAATGT
GGTGTTTACAAATTGTGAGGCACCATATGTTCATTTTTTTATATTAAATG
ACAATTATATCTTATCAGTAGAGAAGCTTTGTGTACTCTGAAAACAATTT
AAGATTTTCTTATTAGTATAGAAACATAGTAACAACCTGCCTTCTGTAAC
TAATCTTGACATTAAAAGAAATAATATATGTATTAAATGTAATATACACT
ATGTACCAGAGTCTGTATTCCACAGAATTTATTACAGATATTTTACTTAA
GAGAATCTAAGTATTCTCTGCAATATTTTAGTTCATGCTTAAGGAAGTTT
CTTTCACAAATGCCTCTATATAATTTATTCAAAGTTGAATTTGGTTCATA
TTTTAGGCTTTTCAGATTAGGCACTGTTAATTGATTCATCTTTAGTCAAG
TACTATCTCTGCAAGCTTTGAAAAAGAAAGTGAGAGATTTGCCCAAATAA
CATTGCTTTACACAAAACCAAAACCACAAGAAATGTTTTGCCATTTCAAA
ATCGTGTGCAAAACTTCACCAGGTGCAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_k10.g1 MSMg01no100_k10.g1 CHROMAT_FILE:
MSMg01no100_k10.g1 PHD_FILE: MSMg01no100_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:35 2005
         (585 letters)



>mm_chrX_61174005_61174988
          Length = 984

 Score = 1093 bits (565), Expect = 0.0
 Identities = 580/585 (99%), Gaps = 1/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttactttttaattacattaaactcagaaaagctgaatttacctttgtataataatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttactttttaattacattaaactcagaaaagctgaatttacctttgtataataatttt 260

                                                                       
Query: 61  ttctttgtgttcaatgtggtgtttacaaattgtgaggcaccatatgttcatttttttata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttctttgtgttcaatgtggtgtttacaaattgtgaggcaccatatgttcatttttt-ata 319

                                                                       
Query: 121 ttaaatgacaattatatcttatcagtagagaagctttgtgtactctgaaaacaatttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaaatgacaattatatcttatcagtagagaagctttgtgtactctgaaaacaatttaag 379

                                                                       
Query: 181 attttcttattagtatagaaacatagtaacaacctgccttctgtaactaatcttgacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attttcttattagtatagaaacatagtaacaacctgccttctgtaactaatcttgacatt 439

                                                                       
Query: 241 aaaagaaataatatatgtattaaatgtaatatacactatgtaccagagtctgtattccac 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaagaaataatatatgtattacatgtaatatacactatgtaccagagtctgtattccac 499

                                                                       
Query: 301 agaatttattacagatattttacttaagagaatctaagtattctctgcaatattttagtt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaatttattagagatattttacttaagagaatctaagtattctctgcaatattttagtt 559

                                                                       
Query: 361 catgcttaaggaagtttctttcacaaatgcctctatataatttattcaaagttgaatttg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 catgcttaaggaagtttctttcacaaatgcctctatataatttattcaaacttgaatttg 619

                                                                       
Query: 421 gttcatattttaggcttttcagattaggcactgttaattgattcatctttagtcaagtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttcatattttaggcttttcagattaggcactgttaattgattcatctttagtcaagtac 679

                                                                       
Query: 481 tatctctgcaagctttgaaaaagaaagtgagagatttgcccaaataacattgctttacac 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 tatctctgcaagctttgaaaaagaaagtgagagatttgcccaaatagcattgctttacac 739

                                                        
Query: 541 aaaaccaaaaccacaagaaatgttttgccatttcaaaatcgtgtg 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaaccaaaaccacaagaaatgttttgccatttcaaaatcgtgtg 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)