BAC Information

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BAC

Clone NameMSMg01-101G12
ChromosomeX (Build37)
Map Location 80,340,140 - 80,340,268
singlet/doubletsinglet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101G12.T7 (MSMg01no101_g12.b1)MSMg01-101G12.TJ (MSMg01no101_g12.g1)
ACCAG316826AG316827
length803832
length of high quality
(start - end)
129 (136 - 264)66 (141 - 206)
definitionCHROMAT_FILE: MSMg01no101_g12.b1 PHD_FILE: MSMg01no101_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:36 2005CHROMAT_FILE: MSMg01no101_g12.g1 PHD_FILE: MSMg01no101_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNCCNCCCNNNCCCCCTA
TTATTCTTANTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAA
AAAAGGATCCGCGGAATTCATGGATTTCCCGAGACCGTTTTACTTAGAAC
AATAGAAATTTAAGTATTTTTGGCAAAGGACATAACATGAGCTAACTTGC
ATTTGTATAACCTCTTTGTTGCAAAAATTTTGATGCTAAGGTTTAACACT
CTGATAAAGCATCATAGGACCTAAAGAGATGGCAATTTCAGGAAGCTATT
GAAATAACTGGCATAAAAGTTGCCACGATTTACGGTATTACTCATAATAT
CAAAAAGAGGTCAAAAGTATATTCATTTGCTACTTTTTAACACATGAAGC
CCATTAACTGACATAATTTAAAATTTTATTCCTTAATATTCATTAATGTG
TACTGTAAGGCCTATTACACAACTTTGTACATTCATTTCTGCCTTTCCTT
TGTAATATAGAAACTGGACATTCCTCCCACTATACCAGGTCTTGTTAGTG
TGCCAACATATATCCCACTGAATTAATATTACAAATATTAAATCATTTAA
TACCCAAATACCACCACACAATCCTATTTGATTAAGTATTTTGCCATTAT
TGCTAAACATATATCTCACTTTTTTGTTTGCTGATTCTTTTTTACCACTC
CACCAAATGGTTTTCATCTCTTTTCCACCCAATGTTTTTATCATAATTAC
CTTTAACTATCATTCCCAAATACATCCTCTTTATTCCTCTATTTACTCAA
TCA
NAAAAAAAAATAAAAAAAAATAAATATATATTTTTTATCTCCCTTTTCCN
NCAATATATATTTCGTCACTATGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGCGAAATTCACTTTG
TAGACCAGGCGGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCTA
GTGCTGGCATTAAAGGCGTGCACCACCACGCTCGGTTAAAATATAGTTTT
TAAAAAATATTCTTAATAGTATACAAAGCTTTTAAGATGCAAGGAATAGA
CAACTGTATATTAGTTCCTATTCCAAAAACACCGACCTATTATAAGTACA
GTAATCACGAGATAGAAACCATGTTCTATACCTTTCTACCTCATATTTAC
TTGAATAATTCAAAGCATTCCCATCCTAGAAAATATAATGAGTTGACGCA
TCTCATAGATATTAATAATTCATTCTTGTTCTAGCCTTTAATTGCAGAAC
TTAAATAATGAATAAAACGCATAGTATAATACACTGTCTTGCATACGTCA
ATTTCTAGTACTTATCACAAAATGTTAAAGTCTGATCACTTATAGGGCTA
AAAACATATAATAGTAAAAGTGTAAAAAATACCTGTCTTCCCCCCATAAT
ACAAATTTTTTTGTTATTTCTTATTCTTACTCCTATTTTATCTCTTATTA
TCTTTTTTTATAAACAAAACATATACACACTATTTATAACCCTTCTACCG
TTTTATTTTTACTATATGTTTTTTTGTACTATCCTATATACCTATTATGT
GCATTTTCACTGTACTTATCCATATTACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_g12.b1 MSMg01no101_g12.b1 CHROMAT_FILE:
MSMg01no101_g12.b1 PHD_FILE: MSMg01no101_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:36 2005
         (129 letters)



>mm_chrX_80339940_80340468
          Length = 529

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgttttacttagaacaatagaaatttaagtatttttggcaaaggacataacatgagctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgttttacttagaacaatagaaatttaagtatttttggcaaaggacataacatgagctaa 270

                                                                       
Query: 61  cttgcatttgtataacctctttgttgcaaaaattttgatgctaaggtttaacactctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttgcatttgtataacctctttgttgcaaaaattttgatgctaaggtttaacactctgat 210

                    
Query: 121 aaagcatca 129
           |||| ||||
Sbjct: 209 aaaggatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)