BAC Information

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BAC

Clone NameMSMg01-101I15
ChromosomeX (Build37)
Map Location 160,538,427 - 160,539,013
singlet/doubletsinglet
Overlap geneTmem27
Upstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b
Downstream geneAce2, Bmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I15.T7 (MSMg01no101_i15.b1)MSMg01-101I15.TJ (MSMg01no101_i15.g1)
ACCAG316925AG316926
length698803
length of high quality
(start - end)
587 (58 - 644)176 (138 - 313)
definitionCHROMAT_FILE: MSMg01no101_i15.b1 PHD_FILE: MSMg01no101_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005CHROMAT_FILE: MSMg01no101_i15.g1 PHD_FILE: MSMg01no101_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGA
ATCTCCGAAAAAGCCAATGGGTCAAGTCACTCTGGAACATTAATTATACG
TATTTTCCAGAAGATGGACTGACTGTGGCTACCTAAAATTCTTACATCTG
CACACACGTACCCAGAGACACTGATAAGGACCGTCTTTGTAGCATTCTTC
ATTAAGCATCGAAACAACATAAGTGTCTATTGATAAAGGGGGAAAGGATA
AAGTAACTAGGATATATGCCATCAAAGAAATATTTCTCCATATACTACTA
GAAAGATACATTAAAGCCCAATCAAGCCAGATAATTCTGTCGTGGGGAAA
AGGGTACATATTTTCTTAGCAGTGAATTTGAATTCTAAACAGCCTCCAGC
TTTGACAATCAAAAATGTCTCCAGGTATTGCAAAACATCCCTGAAGGGCA
AAATAATCACTTAATAGAAACTGCTGAAGTAGAACTACATATTTTTAACA
AAAAGTTAGGGGCTGGAGAAATGGATCAGCAGTGAAGATACTTGCAGCTC
TTGCAAATGCCTAGAGTTCATTTCCCAGTGTCCACACCACGCAGCTCATA
TCACCTATGGCTTCAGCTCCAAGGAATCTGATGCTCTTTTCTGGCCACTG
AAGGCATTCACACACACACACACACACACACACATATATTTTCTCTTA
GGGGGTGTTGTGGGGTGTGTGTGTGGGCGTGGCCTTGCTTGNGNGCNTTC
CGTNAATNTAACTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTA
CCTATTCAGTAACGTTCAAATTCACTTCTATTTCACATGGTGAAACGAAT
TAGGCATTACAAAGAACGGAGCTAGAATAGCTCAGGGCTGGTTTGCAGAG
TGATTACTTAGGACAGTAGAGTCTCACCCAAACAAGTTGTGAATAGGTGG
GTTAACCATGAAAGAGTTATGGAATCCCCCAGATAGGTTTCTTCACTAGG
CCCAAAGGAACAGCATAATCAGGCATTTACTATTTTTCTTTGGCGGGGGG
CTTAACAATAGACTAGTATTACACCTTGGCTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTCCCTCGCACGAGGCCGCGTGTGAGGTCGCTGCGGGGGGGGTGAAAAGC
GCTTGCATGGCCGCGCGAGTAAGAGAGCGCGGGGGAGATGGGGTGTGGGG
AGAGCGGGGCGGGGGGGCAGAGTGTGGTGAGGCGAAACAGACAGGAAAAA
AAGACCCGCCGAACGGCCAGAGGGGATGATAAGGAAGCTGGGTATAAGAC
GGTAACACCTGAGCGGAGTGAGCACCGGGCTGCACGGAGGCGCGGGCGGG
GTGGTAATGGGGAGAGACATAAAGGACAGTTAAAAACAAAAAATACAAAA
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i15.b1 MSMg01no101_i15.b1 CHROMAT_FILE:
MSMg01no101_i15.b1 PHD_FILE: MSMg01no101_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:47 2005
         (587 letters)



>mm_chrX_160538252_160539238
          Length = 987

 Score = 1120 bits (579), Expect = 0.0
 Identities = 585/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaagccaatgggtcaagtcactctggaacattaattatacgtattttccagaagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaaaagccaatgggtcaagtcactctggaacattaattatacgtattttccagaagatgg 703

                                                                       
Query: 61  actgactgtggctacctaaaattcttacatctgcacacacgtacccagagacactgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actgactgtggctacctaaaattcttacatctgcacacacgtacccagagacactgataa 643

                                                                       
Query: 121 ggaccgtctttgtagcattcttcattaagcatcgaaacaacataagtgtctattgataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggaccgtctttgtagcattcttcattaagcatcgaaacaacataagtgtctattgataaa 583

                                                                       
Query: 181 gggggaaaggataaagtaactaggatatatgccatcaaagaaatatttctccatatacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gggggaaaggataaagtaactaggatatatgccatcaaagaaatatttctccatatacta 523

                                                                       
Query: 241 ctagaaagatacattaaagcccaatcaagccagataattctgtcgtggggaaaagggtac 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctagaaagatacaacaaagcccaatcaagccagataattctgtcgtggggaaaagggtac 463

                                                                       
Query: 301 atattttcttagcagtgaatttgaattctaaacagcctccagctttgacaatcaaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atattttcttagcagtgaatttgaattctaaacagcctccagctttgacaatcaaaaatg 403

                                                                       
Query: 361 tctccaggtattgcaaaacatccctgaagggcaaaataatcacttaatagaaactgctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctccaggtattgcaaaacatccctgaagggcaaaataatcacttaatagaaactgctga 343

                                                                       
Query: 421 agtagaactacatatttttaacaaaaagttaggggctggagaaatggatcagcagtgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtagaactacatatttttaacaaaaagttaggggctggagaaatggatcagcagtgaag 283

                                                                       
Query: 481 atacttgcagctcttgcaaatgcctagagttcatttcccagtgtccacaccacgcagctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atacttgcagctcttgcaaatgcctagagttcatttcccagtgtccacaccacgcagctc 223

                                                          
Query: 541 atatcacctatggcttcagctccaaggaatctgatgctcttttctgg 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atatcacctatggcttcagctccaaggaatctgatgctcttttctgg 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)