BAC Information

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BAC

Clone NameMSMg01-102P02
ChromosomeX (Build37)
Map Location 160,167,438 - 160,167,965
singlet/doubletsinglet
Overlap genenone
Upstream geneRbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
Downstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P02.T7 (MSMg01no102_p02.b1)MSMg01-102P02.TJ (MSMg01no102_p02.g1)
ACCAG317952AG317953
length783711
length of high quality
(start - end)
249 (132 - 380)528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no102_p02.b1 PHD_FILE: MSMg01no102_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:41 2005CHROMAT_FILE: MSMg01no102_p02.g1 PHD_FILE: MSMg01no102_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCCCCCCCNTCCCCTTTT
ATCANNNNCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCCTCTTGTCTTACAGACCTTAAATCCCATCAGAA
ATCAGTTTATTAACCCCATAATAGTTGTGTCTCAAATGTATCAGTGAGAG
CAACTTAACTGTCAGTTAGGTCAGTATTGTAGCATGCTGGGTCCAGGACT
GAGTCCGGCCAGTGTTGTCTTTTCTCTCCAGGGGTGTGTATGGCATCCTA
TGGTGCAATGAAAACTAGCCAGCAGGGAGGAAATTTCCCAGTCAACTTGA
GATCGATTGCTCTATGTCCTGCAGCCAAAGTGTAGGTGTCTTCAGTAATT
GCTTCTTCCTATGTATTTATGTGTGTAACCAAAGCCCATGGCAATAGCAA
TTGAAGTTCCCTCCTCTCAGGTGATTCTAGCTTGTATTAAGTTGACATAT
AGCTAGTCATCAGTTTCCATGAGAATTTCCCATAAATCCTTAGTTTAAGT
TAGCCCAACCAAAATCCCCTCTTCTTCCTCATCCCTCTATCTATATCCTC
CCTCAATCCTTAATTCAACTGCATATTTTCTTTTATAGGATTTTTTAACT
GTAACTCTCATGTTTATATTCCACTAGTTACCCCTGAATTTTTATCCCTA
CGAGCATCAATGTTTCAGTTTTAAAAAAATATCCATTTAACTCATTAAAT
TGCCCATACTCCCACTATATATATGTCTTCGCT
CATCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAACAGAGGAATCAGTAATGGCTG
AGAAGCACTTAAAGAAATGTGCAATGTCCTTAGCCACCAGGGAAATGCAA
ACCAACACGATTTTGAGATTCCATCTTACACCTGCCAGAAGGGCTAAGAT
AAAAAACTCAAAAGATGTATATATAATCAAAAAAGGGCAAAGTCTTGTGT
CTTGTGAGCACCTTCACTTTAGCAAATATTAATTGCCAACAGCAACTAAG
GGAGAGGTGGGACCTCATGTGCCCTTCCTTGCCTCCATGATGCAGTGTTG
ATATGCCCACTTTTTTGCTTACCCCAGCTGTAGGAACACTTTCTACTACA
TTCTGTTTGTGATCATATATTTAAATATTCTGCAAGGGATAATCAAAGAC
ATTATTTTTAATTTTTTTGGAACTAGTACCTGTTGCACAAAAGGCCTTAA
CAAGCTCAGGCCTTATGTGACAATCATTAAAGACTTTTTGACAAAAAGCA
TATCATTCATCCAGTTAACAATTCACCTGTTACAACAAAAATTTCCTATA
CAGTTATAAACTTGAATTATTCCCAAATCCTCTGTGTTAATTTTTAAATA
ATGTATGATAAATTACTTCAGAACTTAGTGACTTAATACAACAAAAATCC
TCTTCATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p02.g1 MSMg01no102_p02.g1 CHROMAT_FILE:
MSMg01no102_p02.g1 PHD_FILE: MSMg01no102_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:41 2005
         (528 letters)



>mm_chrX_160167097_160168024
          Length = 928

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaacagaggaatcagtaatggctgagaagcacttaaagaaatgtgcaatgtccttagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttaacagaggaatcagtaatggctgagaagcacttaaagaaatgtgcaatgtccttagcc 810

                                                                       
Query: 61  accagggaaatgcaaaccaacacgattttgagattccatcttacacctgccagaagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 accagggaaatgcaaaccaacacgattttgagattccatcttacacctgccagaagggct 750

                                                                       
Query: 121 aagataaaaaactcaaaagatgtatatataatcaaaaaagggcaaagtcttgtgtcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aagataaaaaactcaaaagatgtatatataatcaaaaaagggcaaagtcttgtgtcttgt 690

                                                                       
Query: 181 gagcaccttcactttagcaaatattaattgccaacagcaactaagggagaggtgggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gagcaccttcactttagcaaatattaattgccaacagcaactaagggagaggtgggacct 630

                                                                       
Query: 241 catgtgcccttccttgcctccatgatgcagtgttgatatgcccacttttttgcttacccc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 629 catgtgcccttccttgcctccatgatgcagtgttgatatgcccacttttttgcttagccc 570

                                                                       
Query: 301 agctgtaggaacactttctactacattctgtttgtgatcatatatttaaatattctgcaa 360
           ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 569 agctgtagggacactttctactacattttgtttgtgatcatacatttaaatattctgcaa 510

                                                                       
Query: 361 gggataatcaaagacattatttttaatttttttggaactagtacctgttgcacaaaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gggataatcaaagacattatttttaatttttttggaactagtacctgttgcacaaaaggc 450

                                                                       
Query: 421 cttaacaagctcaggccttatgtgacaatcattaaagactttttgacaaaaagcatatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttaacaagctcaggccttatgtgacaatcattaaagactttttgacaaaaagcatatca 390

                                                           
Query: 481 ttcatccagttaacaattcacctgttacaacaaaaatttcctatacag 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttcatccagttaacaattcacctgttacaacaaaaatttcctatacag 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)