BAC Information

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BAC

Clone NameMSMg01-103H01
ChromosomeX (Build37)
Map Location 136,633,102 - 136,633,678
singlet/doubletsinglet
Overlap geneE230019M04Rik
Upstream gene4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, LOC622213
Downstream geneLOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103H01.T7 (MSMg01no103_h01.b1)MSMg01-103H01.TJ (MSMg01no103_h01.g1)
ACCAG318307AG318308
length707712
length of high quality
(start - end)
580 (52 - 631)314 (74 - 387)
definitionCHROMAT_FILE: MSMg01no103_h01.b1 PHD_FILE: MSMg01no103_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005CHROMAT_FILE: MSMg01no103_h01.g1 PHD_FILE: MSMg01no103_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGGGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTTGTTACTATGTAAAAGAAAGAACCTAAATTCCTTT
GTTTGGTCAGTGCTATTCCATACTTGGCAATTTTTAACAAGATAAGCCTT
TTGCACAACCAGAGGTCAACTATTTTCTGAGTATTTATTGACAATACCAA
TTATTAAATAAGTCTGACTCATGATTTGGGGAGGGGGATGTTCTGTTAAG
ATTACGAGATAATTTTTTTTGTTTTTTTACTTTTAATGATCTAAACAGTT
CAAAGTAAGAAAAAGTTGTATCCCTTGATCCCCGTGACAAGTACAAGCCC
TTCCAGTTTTCAGGAGGGGATTTTCTGTTCAGATCTCCATGGAATCCTTA
TCTTGTGAGATATTAGTGTGCTCCATCCCACTTAAGCTCTTTTTTCTCTT
GTCCCTCCTTTGAAATATTATCGCAGACACTTTTAATTTTCTTAAGAGGA
AAAAAATTAGTGAGCTGTTTTCTTTGAATTATCTTTCAGTGGAACCACAG
ATTATTATAATAACCACCTTGAAGTTGTGCCTAGGAAGTCTATCTGAACT
TCCCATACATCGTCATTCTTCCTTTCCTCGATGACCCTCTCGACATGTAT
GAAATACCATTCTACTTTTCAATGATTTAAGCATTGCAAAGTCAAGAAAC
AAATAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATAATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCACTGTTGGTGGGATTGCAGGATTGTACAACCACTCTGGAAATCA
ATTTGGTGGTTCCTCAGGAAATTGAACATAGTACTACCGGAGGATCCCCC
AATACCTCTTCTGGGCATATATCCAGAACATGTTTCAACCGGTAAGAAGA
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATACTAGCCAGAAGT
TGGAATGAACACAGATGCCCCTCATCATAGGAACGGATACCGTACACGTG
ATACACTTATGCCCTGCACTACTATTCACCTATTACAACGAATGAACTTA
TGAAATTCCCAGGCTAATGGATGCACCTGGAGGGCACCATCCTGAGTGAG
GAAACCCCTTCGTAAAAGAGATCCGCCCATTTTTTCCCACTGATATTTGT
ATTTTACCCTATATTTTTTAAATACCCCCGATCCACCTTTCCCTTTGCCC
ACCCATATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_h01.b1 MSMg01no103_h01.b1 CHROMAT_FILE:
MSMg01no103_h01.b1 PHD_FILE: MSMg01no103_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:22 2005
         (580 letters)



>mm_chrX_136632898_136633878
          Length = 981

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/580 (98%), Gaps = 7/580 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttg---ttactatgtaaaagaaagaacctaaattcctttgtttggtcagtg 61
           ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttgcac--actatgtaaaagaaagaacctaaattcctttgtttggtcagtg 262

                                                                       
Query: 62  ctattccatacttggcaatttttaacaagataagccttttgcacaaccagaggtcaacta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctattccatacttggcaatttttaacaagataagccttttgcacaaccagaggtcaacta 322

                                                                       
Query: 122 ttttctgagtatttattgacaataccaattattaaataagtctgactcatgatttgggga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttctgagtatttattgacaataccaattattaaataagtctgactcatgatttgggga 382

                                                                       
Query: 182 gggggatgttctgttaagattacgagataattttttttgtttttttacttttaatgatct 241
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 383 gggggatgttctgttaagattacgagataa-tttttttgtttttttacttttaaagatct 441

                                                                       
Query: 242 aaacagttcaaagtaagaaaaagttgtatcccttgatccccgtgacaagtacaagccctt 301
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaacagttcaaagtaagaaacagttgtatcccttgatccccgtgacaagtacaagccctt 501

                                                                       
Query: 302 ccagttttcaggaggggattttctgttcagatctccatggaatccttatcttgtgagata 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccagttttcaggaggggattttctgttcagatctccatggaatccttatcttgtgagata 561

                                                                       
Query: 362 ttagtgtgctccatcccacttaagctcttttttctcttgtccctcctttgaaatattatc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 ttagtgtgctccatcccacttaagctcttttttctcttgtccctcctttgaaatattgtc 621

                                                                       
Query: 422 gcagacacttttaattttcttaagaggaaaaaaa-ttagtgagctgttttctttgaatta 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 622 gcagacacttttaattttcttaagaggaaaaaaaattagtgagctgttttctttgaatta 681

                                                                       
Query: 481 tctttcagtggaaccacagattattataataaccaccttgaagttgtgcctaggaagtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctttcagtggaaccacagattattataataaccaccttgaagttgtgcctaggaagtct 741

                                                   
Query: 541 atctgaacttcccatacatcgtcattcttcctttcctcga 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atctgaacttcccatacatcgtcattcttcctttcctcga 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space:   553470
Effective search space used:   553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)