TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTTTGTTCAGTTACTCAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTTTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATGGATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTATCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTAT
CCTTTTTTTTTTTTTTTTTTTT

ATGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAAAATATATTCATTTCTTTTCATTCTTTTGCA
GTCTGATTGATGATAGAAAATATTTCTTGTACAACATAAAGAAAATGTAT
AGCCTTTACAAATTTCAATGGAACAATGATAAACATCTCCATTTCCCAAT
GACACACTCTTAATAATGTTCCTGTAGTTTCAAAGTAAATTTTACTTCAT
ATATATTGAAATAGTGTCTTTGTGTTTTCTTGAATGTAAAATTCATCATA
AAATATTGAATACTATTGATAATCATGAAATAGGTTCCAATGAATCAACT
TCCCCTTGCTGCTAAAATATATTTCACCATTAGAGTAAAAATATTTATGT
TAATGAAGAGATTGCTCATTGTTCCCAATGCCCACAATTCACACACAGGA
AGTACTGTAGTAGAAAGACCTATAATTTGTTATTTTTTATCAAATTTTCA
TAATATTACAGGATAGATAGAAGAGTTTAATAGGTACTAATATATGAAAT
CAGATTCCATATTACATTACTTTTCTAAACAGCATCTGCAACTTATAATA
AAAAGTTTCACATCAATATTGAACGTTGACATGAAACAGAAACACTGACT
GGTTTAAAATTTTGCTTTTGCCCAAGGGAGAATTGAGGGGATTAGAGAAG
CTATGGATTTACCTATAATTATTTTTAGTCAA

Query= MSMg01no103_o21.g1 MSMg01no103_o21.g1 CHROMAT_FILE:
MSMg01no103_o21.g1 PHD_FILE: MSMg01no103_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:00 2005
         (600 letters)



>mm_chrX_43389584_43390582
          Length = 999

 Score = 1122 bits (580), Expect = 0.0
 Identities = 595/600 (99%), Gaps = 1/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaatatattcatttcttttcattcttttgcagtctgattgatgatagaaaatatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaaaatatattcatttcttttcattcttttgcagtctgattgatgatagaaaatatttct 740

                                                                       
Query: 61  tgtacaacataaagaaaatgtatagcctttacaaatttcaatggaacaatgataaacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgtacaacataaagaaaatgtatagcctttacaaatttcaatggaacaatgataaacatc 680

                                                                       
Query: 121 tccatttcccaatgacacactcttaataatgttcctgtagtttcaaagtaaattttactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tccatttcccaatgacacactcttaataatgttcctgtagtttcaaagtaaattttactt 620

                                                                       
Query: 181 catatatattgaaatagtgtctttgtgttttcttgaatgtaaaattcatcataaaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 catatatattgaaatagtgtctttgtgttttcttgaatgtaaaattcatcataaaatatt 560

                                                                       
Query: 241 gaatactattgataatcatgaaataggttccaatgaatcaacttccccttgctgctaaaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaatactattgagaatcatgaaataggttccaatgaatcaacttccccttgctgctaaaa 500

                                                                       
Query: 301 tatatttcaccattagagtaaaaatatttatgttaatgaagagattgctcattgttccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatatttcaccattagagtaaaaatatttatgttaatgaagagattgctcattgttccca 440

                                                                       
Query: 361 atgcccacaattcacacacaggaagtactgtagtagaaagacctataatttgttattttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 atgcccacaattcacacacaggaagtactgtagtagaaagacctataatttgtta-tttt 381

                                                                       
Query: 421 tatcaaattttcataatattacaggatagatagaagagtttaataggtactaatatatga 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tatcaaattttcataatattacaggatggatagaagagtttaataggtactaatatatga 321

                                                                       
Query: 481 aatcagattccatattacattacttttctaaacagcatctgcaacttataataaaaagtt 540
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 320 aatcagattccatattacattacttttctaaacagtatctggaacttataataaaaagtt 261

                                                                       
Query: 541 tcacatcaatattgaacgttgacatgaaacagaaacactgactggtttaaaattttgctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcacatcaatattgaacgttgacatgaaacagaaacactgactggtttaaaattttgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 999
Length adjustment: 10
Effective length of query: 590
Effective length of database: 989
Effective search space:   583510
Effective search space used:   583510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)