BAC Information

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BAC

Clone NameMSMg01-103O22
ChromosomeX (Build37)
Map Location 158,673,940 - 158,674,334
singlet/doubletsinglet
Overlap genenone
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103O22.T7 (MSMg01no103_o22.b1)MSMg01-103O22.TJ (MSMg01no103_o22.g1)
ACCAG318675AG318676
length723740
length of high quality
(start - end)
394 (48 - 441)280 (73 - 352)
definitionCHROMAT_FILE: MSMg01no103_o22.b1 PHD_FILE: MSMg01no103_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:00 2005CHROMAT_FILE: MSMg01no103_o22.g1 PHD_FILE: MSMg01no103_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGATTCAGC
AGTTATATCCCTTCTGGGTTTTTTGTTGGTTTATTTTGTTTTGAAGCAGG
ACTTTCCTGGTGTTCATGTTTGCTGGATCCCTGGCCATGACAAGAGATAT
CGGAGATGTCACTGGTTCTGGAAAGCATCTCCCAGTCCCTTCCGGTCACT
GTGAGTTACCTTCCCTAGAGAGCCCGCTTGACCCACTAGTCAGTGAATGA
CCTGTACATACTACCCACATCTAGTCGTTGAAAGTGGCATCGCCACTTTC
TTTGCCACTCTTTACATTTAATCCAGTTCCATTGTAAACTGACTCAATGA
ATAACTGGCAACCCTCATATTAGGAGATCAGTGTCATCTGATTAGGGGAC
AAACATTGCACCAGGATTGGCCCACATCCTCCAAGATGGGGGTGGGGGGG
CAAAGAATCTTACAAGGAAGGAGGAAAGGTCTAGATCAGCTTTAAATTCC
ATATAACGTCTAAACACTGCTGTTAGAGAACACAGACTTTGTCCCCCAAC
TACTACTCCTCCACATCACATCCTAGAGTTGTTTTAATGATGCCATGAGA
CGGTGTCTCTAATAGTACTAAGCACCTTATCGTAACCCGGAAAGCATCAA
TAGTTCTCCATGTTTCTATAATGCCCCCAGCTGACTCTCCGTTACTCAAT
ATGGCTCAATTCGCATTATAGAC
CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCCTGTGGATTGGACCTCAAATCCAA
TGAAAAGAGTTGTCAGGTCCCCTCAGAAACTGCCATTATTGTACCGATAG
GCATGTCACGCCTGCTGGTCACTATTGCAGCATGCAAGCTGCAGTGCTGG
GTATGGCTATTGATGACTTTTCTCCCTCATCAGTCTTCAAAGAGCCTTAA
GACACTATGAAGGCAGGGATAGAGTTTCCTGGTGTCTGTGCAAGGGTGCA
TTCTATAACTGATGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTT
CAGCATCTATAGAGATTTTCCTCCCCCCCCCACCCCATTTCGATTTGACG
AGTTTGCCCCTTCCCTTCTCATCCACCCGTATTACACTTTCCTGTCCTTG
CCACCGAGATCTATTGCTTTATAATCCATGTTCTTTACGTCCCATATCCT
TCCCCCCTATGTTACTTTCCCCTCTTTCCCCCTCTAATTTCCCCATTTTT
TCTCCCCTCCCCCTTCAATCCCTCCTAACCCCCCCATTCACCTTTTATCC
CCCCCCACTCATTAAATTCTATCTACCAACCCACCTTATTTAACAACTTC
CCCCATACCCCACCCTTTTCCCGCCCTTTCCTTCTTCTTATCATATTCCC
CTCCTTTTTCCACCTTCCCACTTCTCCCCTCATTTTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_o22.b1 MSMg01no103_o22.b1 CHROMAT_FILE:
MSMg01no103_o22.b1 PHD_FILE: MSMg01no103_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:00 2005
         (394 letters)



>mm_chrX_158673740_158674534
          Length = 795

 Score =  687 bits (355), Expect = 0.0
 Identities = 385/395 (97%), Gaps = 1/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagttatatc-ccttctgggttttttgttggtttattttgttttgaagcaggactttc 59
           |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagttaaaacaccttctgggttttttgttggtttattttgttttgaagcaggactttc 260

                                                                       
Query: 60  ctggtgttcatgtttgctggatccctggccatgacaagagatatcggagatgtcactggt 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgttcatgtttgctggatacctggccatgacaagagatatcggagatgtcactggt 320

                                                                       
Query: 120 tctggaaagcatctcccagtcccttccggtcactgtgagttaccttccctagagagcccg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tctggaaagcatctcccagtcccttccggtcactgtgagttaccttccctagagagccca 380

                                                                       
Query: 180 cttgacccactagtcagtgaatgacctgtacatactacccacatctagtcgttgaaagtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cttgacccactagtcagtgaatgacctgtacatactacccacatctagttgttgaaagtg 440

                                                                       
Query: 240 gcatcgccactttctttgccactctttacatttaatccagttccattgtaaactgactca 299
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 441 gcatcgccactttctttgccactctttacacataatccagttccattgtaaactgactca 500

                                                                       
Query: 300 atgaataactggcaaccctcatattaggagatcagtgtcatctgattaggggacaaacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaataactggcaaccctcatattaggagatcagtgtcatctgattaggggacaaacat 560

                                              
Query: 360 tgcaccaggattggcccacatcctccaagatgggg 394
           |||||||||||||| ||||||||||||||| ||||
Sbjct: 561 tgcaccaggattggtccacatcctccaagacgggg 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)