BAC Information

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BAC

Clone NameMSMg01-106E02
ChromosomeX (Build37)
Map Location 16,532,831 - 16,533,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043949, LOC100043950, Cypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph
Downstream geneLOC100043063, Efhc2, Fundc1, EG278181, EG668994, EG436196, EG331391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106E02.T7 (MSMg01no106_e02.b1)MSMg01-106E02.TJ (MSMg01no106_e02.g1)
ACCAG320392AG320393
length1,2621,285
length of high quality
(start - end)
694 (86 - 779)504 (92 - 595)
definitionCHROMAT_FILE: MSMg01no106_e02.b1 PHD_FILE: MSMg01no106_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:25 2005CHROMAT_FILE: MSMg01no106_e02.g1 PHD_FILE: MSMg01no106_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATTNNNCACATTTGGCGCTATAGACTCCTATAGGGAGAGGATCCGC
GGAATTCTCACCTGAGGAATACTGACCGATATGAGACGCATCTGAAAAAA
TGTTCAACTCCTTAATCCTCAGGGAAATGCAAATCTAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGAATAAAAATTCAGGTGACAG
CAGATGCTAGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGGTGGT
GGGATTGCAAACTTATACAACCCCTCTGGAAATCAGTCTGGCTGTTCCTC
AGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCAAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAGTACTACTCAGCTACTAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AAGAACTCGCATAATATGTACTCACTGATAAATGGATATTAGCCCAGAAA
CCTAGAATACCCAAGATATAAGATATAAACACCCATGGAAGAGTTACAGA
GACAAAATTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCAT
ATCCGGGGATCCATCCCATAATCAGCTTCCCAACGCTGACAACATTGCAT
ACACTAGCAAGATTCTACTTAAAGGACCCAGATATAGCTGTCTCTTGTGA
AAATATCCCGGGGCCTAGCAAACATAAGAAGTAGATGCTTCACGTTCGAT
ATTGGAGGGATCAAAGGGCCCCCCAATGGAAGAGCTAGAGAAAGTACCCC
AAGGAGCTAAAGAAATCTGCCATCCTTTTGGTTGTAACAACTATATGAAC
TTACCCCTACCCCCCAAGGAGCTTCGTGTCCTCTACTTACTTATGAATCC
AAAAAATAGCCTCAATTTGCCCCCTCATTGATAAGAAAAAGGTCCCTTTT
GTTCCGTGCAAACTTTTTTTTTCCCCTCATTACACAGGGTAATATTCCTG
GGTCCATAAAAAATGCTAACATGCTCTTCTCCTTGTGTAAAAACTGGTGT
GGGCACCTATTTGTGTNATAACATTGTGGTTAAAGTGTTACAGATCAATA
CAATATGCCCCC
NCAAGTTTTTTTNNTATGATTGGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTATGGATACAATCAAT
AACAATTAGTGCAAAAAAGACCCCATGAATTTGAAGAGCTGGAGAGGTTA
TATGGGAAAGAAGGTTTGGAGGAAGGAAAGGGAAGGGAGAATCGTACTTA
AATTGTAATCTCAAAATAAAAAGAAAATGGGTAGCCCTTGAGAAAACATG
CAAAGGACTTACATGAGACATCCTATATACATGAACTCATTAGTAAACAG
CTCACTCTTCTCTTTGCATTATCCTTTCTAAAAGTTACAATATACTACTA
TACTTATCCATACATTCTTTTACTTAGGCTAAGATCTGCAAATGAAGGCA
ATATTTTGGTGTGCTTCCTTCTGAGATTGGCTGATCTTGCTTAATAGTAT
GTATTATAAGCACCTACTTTCCTATGAATTTTGTGATTTCATTTTTCCTT
AGAGCTGAATAGGTGTCTATTTTGTATTTGCAAGAGCTTTTCATTATTCC
ATCATCTGCTGATGGACAAATATATTGGTTCCATTTCTTTGCCATAGTGA
ATAGCACAACAGTAAGAATACCGGTGTGACTATCTCTGTGGTAGGCAATG
AAGCATAGTAGTTCAGGGAATTGATAAAACTATTTTTACTGGAACTATTT
TACAAAACTATTTTATAGAAGAGAGAACATTGGATAATATCAGCCATCTA
TTAAGAAGTTTTTTACCAAAGGGTTTTTACTTTCCCAATGTCACGTTATA
AATGCTCTAAGCCCCCTCTGTTATTTTGTTTGGCTCTTTTAAATTGCCTC
CTATATCCACTTTTCATTTTTCCCCTGTGACTTGGCCAGCATTTGAACCA
TTCCCACTAATTTGGTCCTCATTTGTTTCATGGCCCCAATTGACAACTTC
TGTCTTGCTTCTATTTGTCACTTTCTTTGTATTAGAGTGGTCCTTATCCA
AAAAGCCTGTTATGCCCCTCCTTGGCAATCTATAAGGCTGGGGTGTCGGT
TTTTTTGCACCCCTTTATATCCCCTCTTTTTTTAAATTTCTCCTTATTAT
CTTCCTTTTCTCCTTTCTTTCCCTTTGTCTTCTCTCTCTTATAATTTTCT
CTCTCTATCTTCTTCCCTATGATACACAATTCTCTCTGCCTTCTTTTTTT
TCTTTTTCTGCTTTTATCTTTGCTTTATACTCTATCATCTTGCCTTCTTG
TTCTCTTGTCTTTCTTATCTATCTCTATAATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_e02.g1 MSMg01no106_e02.g1 CHROMAT_FILE:
MSMg01no106_e02.g1 PHD_FILE: MSMg01no106_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:25 2005
         (504 letters)



>mm_chrX_16532720_16533623
          Length = 904

 Score =  905 bits (468), Expect = 0.0
 Identities = 495/504 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatcaataacaattagtgcaaaaaagaccccatgaatttgaagagctggagaggttat 60
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 615 acaatcaataacaattagtgcaaaaaagaggccatgaatttgaagagctggagaggttat 556

                                                                       
Query: 61  atgggaaagaaggtttggaggaaggaaagggaagggagaatcgtacttaaattgtaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 555 atgggaaagaaggtttggaggaaggaaagggaagggagaatcgtagttaaattgtaatct 496

                                                                       
Query: 121 caaaataaaaagaaaatgggtagcccttgagaaaacatgcaaaggacttacatgagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caaaataaaaagaaaatgggtagcccttgagaaaacatgcaaaggacttacatgagacat 436

                                                                       
Query: 181 cctatatacatgaactcattagtaaacagctcactcttctctttgcattatcctttctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 cctatatacatgaactcattagtaaacagctcactcttctctttgcactatcctttctaa 376

                                                                       
Query: 241 aagttacaatatactactatacttatccatacattcttttacttaggctaagatctgcaa 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 375 aagttacaatatactactatacttatccatacattcctttacttaggctaagatctgcaa 316

                                                                       
Query: 301 atgaaggcaatattttggtgtgcttccttctgagattggctgatcttgcttaatagtatg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgaaggcgatattttggtgtgcttccttctgagattggctgatcttgcttaatagtatg 256

                                                                       
Query: 361 tattataagcacctactttcctatgaattttgtgatttcatttttccttagagctgaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tattataagcacctactttcctatgaattttgtgatttcatttttccttagagctgaata 196

                                                                       
Query: 421 ggtgtctattttgtatttgcaagagcttttcattattccatcatctgctgatggacaaat 480
           || ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 195 ggagtctattttgtatgtgcaagagcttttcattattcaatcatctgctgatggacaaat 136

                                   
Query: 481 atattggttccatttctttgccat 504
           ||||||||||||||||||||||||
Sbjct: 135 atattggttccatttctttgccat 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)