BAC Information

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BAC

Clone NameMSMg01-106K13
ChromosomeX (Build37)
Map Location 78,575,519 - 78,575,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546338, LOC100042229, LOC667776, EG629182, Tmem47, LOC100041462, LOC100041474
Downstream gene4930595M18Rik, EG667799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106K13.T7 (MSMg01no106_k13.b1)MSMg01-106K13.TJ (MSMg01no106_k13.g1)
ACCAG320682AG320683
length6931,817
length of high quality
(start - end)
213 (58 - 270)474 (99 - 572)
definitionCHROMAT_FILE: MSMg01no106_k13.b1 PHD_FILE: MSMg01no106_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:25 2005CHROMAT_FILE: MSMg01no106_k13.g1 PHD_FILE: MSMg01no106_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTNNGTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AAAGAGGATCCGCGGAATTCTAGGATGTCTTTGATGTCTTTATTTCTTCC
CTGAAATTTAAAAAGAGCTGTTCAGTTTCCAAGAACATGTAGACTTTCTG
CTGTTTCTTTTGTTGTTGAAGTCCAGCTTTAATCCATGGGTTTATTTCTA
TCTTCTTGTATTGTGGAGGCTTGTTTTGTGTCTGATTATTTTGTCAATTT
AGGGGAAGGATCCATGAAGTGCTGAGAAGTAGACATATTATTTTATGTAT
GTGTAAAAAATATTCTATGGATAACTATTATGTTCATTTGAATCATAACC
TCTGTAAGTTTCATTATTTCTCTGTTTAGCTTTACACTCAATGACCTGTC
TATTAGTGATAATGGTATGCTGAAGTCCCCAACTACTAATGTGTGCTTTT
TTATTTGCTATTCACACTTTACCGATGATTCTTTTACTAATGTTTTTTGC
ATTACACTATTACATTTTCATATTCTTGCACGCTTTCTTGATGTATTCTC
CTCTTTTTATGTTTATGACTTAACCCTTTTTTGTCCAATTCTTCTTCTTT
CCTTCCCCCTTGTTTTATTTCCCTAAATTCTTTTACGCTCTACTTTACTT
TCTCTCCTTTTTATCCCATTCCGCTTTCGATAATCTTCTTTTT
TTATTTTATAAGAGCGGGGCCCCTGNCTCGACXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGAGTGGTTGTAAAGCTTGCCCTTTCAGAGCAATG
GATTATTTTTCACCTCATTTTTGCCTTCTTTAACCTGATCGTTCCTTCTG
TTTTGATTTATTTGTTTAACACTGAGTGGTCTATGCAGCTTTCATTTCTC
ATGTAATTTTCCTTCCTTGGTTTCTTTTCTAATTTATATTGTATCCTTTC
ATTTAATTGTCATTGTATGATTAGTGATTCAAATATTGCCCAAAGAGTAG
GAATGTTGTAGTTATATTTTCATCATATTTTTGACATGTATCATAATTTT
GTGCTGATATCTGACTTTGTTAGCTTCACATATTGCATTTATTATATTTC
CTATTGTTATTATCTCATGTAGAAATCAATATGTCTTCTTCTCCTCACTT
CATTTTTTTTTCTATTTCTATGTGTTCTACAAAATAAATGCATCCTTCAT
AAATTCCTTAGAAATCCCTTGTTATAGATGAATCCGTAGTAAAATTATCA
TTTTTATTTTTAATTTTAAGGACTGGATTTATTTGGCGGAAAAGTAAAAT
TTCTCAACCGAAGAATGTGATTTTATATCCTAAACTTCTCCCAGATGATG
TCTACTGATAAAAAAATATTATAGAATGGCTGGAAGAATTTGTGCAAGCC
GTCAAACAAATAGGAAGACCAATATTCTCAACTAACCTGTGTCTTCCCGA
TCTTCTCAGACACTGATACTTGAAAAAGGCACCATATAATAGCTGGTATG
AGACTTCCATATCCCAGAAAAATGCCTGTTCTGTCCTCATTGAAAAAGTA
GTATGTAACCTGGTAAATATTTGAAGCTTCCAGTATTGTGATAGCCTGGC
TAGTTGGAGTCGTAAAAATCCTCCGTGAACCTGGTAGTAGAATGATATGA
GGAATCTTTTATTTCTTATCTTTTATATAATATTTTTTTCTCGCTCTTCT
ATTCATTACTTTTTTATTCATTTTTTAATTATACTTTATATTCTTCATAA
TTTATTTAATTCTCTTCTCTATTGCTCTTTCTTTTAACTTCTTTAATCAT
TTTTCATTTTCCCATTCATCTATCTTACCTTATTCTCATCTTCTTTTTCT
TACTTTTTTCTCTATCTCTCTCTTCTTCTTTTTTCTTCCTCTTTTCTTTC
TTTCTTTATTCTTACTTACTTTTCTTTTTCTTATTCTTATTCTCTTTTCT
CTTCCCTTCCTTTCATTTTTTCATTTACCCTCTAATGTTCCATCATTATT
TTTTCCTTTTATTTTATCTATCTATATCTTTCCTCTTATTATTCCTTATT
TACTCTTTATATCGCTCTTATTATATTAATCTCTTATACCCTTTCTCTTT
GTCGCTAATTGCTTTATTTTCTCTTTTTATTAGTTTTTTCTTCCTCCAGT
CTTTCCTCTATTCTACTTTCTGAATATTCTCACTATAATACTTGACTGTT
GTCTGTACTCTTTCTTCTACTTATTATACTTATATTCTGGTTTATCTACA
TCAATTCTTCCTTTTATTATTCTTTTCTTTTACACTTCTTAATGTTACTT
CTATATTTTAATCTCTATTCTTATCTTCTATATTCATCCTAACTATCTTG
TATCCTACTTTATTGCTATTCATTACTCTCTTACTCTTATCCTGATTCAT
ATTCTATATAATCTCATTCTTCTCGTCTCTTCTCTTCTCCTCTTCTTACA
CNTTCATTCTTCTACNCTTCTCATCATTATCTTCTGTACNTCTCATATTC
ATCTTATCTATGTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_k13.g1 MSMg01no106_k13.g1 CHROMAT_FILE:
MSMg01no106_k13.g1 PHD_FILE: MSMg01no106_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:25 2005
         (474 letters)



>mm_chrX_78575319_78576192
          Length = 874

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattatttttcacctcatttttgccttctttaacctgatcgttccttctgttttgatt 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 201 tggattatttttcacctcatttttgccttctttaatttgatcgttccttctgttttgatt 260

                                                                       
Query: 61  tatttgtttaacactgagtggtctatgcagctttcatttctcatgtaattttccttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttgtttaacactgagtggtctatgcagctttcatttctcatgtaattttccttcctt 320

                                                                       
Query: 121 ggtttcttttctaatttatattgtatcctttcatttaattgtcattgtatgattagtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttcttttctaatttatattgtatcctttcatttaattgtcattgtatgattagtgat 380

                                                                       
Query: 181 tcaaatattgcccaaagagtaggaatgttgtagttatattttcatcatatttttgacatg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaataatgcccaaagagtaggaatgttgtagttatattttcatcatatttttgacatg 440

                                                                       
Query: 241 tatcataattttgtgctgatatctgactttgttagcttcacatattgcatttattatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcataattttgtgctgatatctgactttgttagcttcacatattgcatttattatatt 500

                                                                       
Query: 301 tcctattgttattatctcatgtagaaatcaatatgtcttcttctcctcacttcatttttt 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctattgttatcatctcatgtagaaatcaatatgtcttcttctcctcacttcatttttt 560

                                                                       
Query: 361 tttctatttctatgtgttctacaaaataaatgcatccttcataaattccttagaaatccc 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tttctatttctatgtgttctacaaaataaatgcatccttcagaaattccttagaaatccc 620

                                                                 
Query: 421 ttgttatagatgaatccgtagtaaaattatcatttttatttttaattttaagga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgttatagatgaatccgtagtaaaattatcatttttatttttaattttaagga 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)