BAC Information

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BAC

Clone NameMSMg01-109O01
ChromosomeX (Build37)
Map Location 150,079,482 - 150,079,686
singlet/doubletsinglet
Overlap genenone
Upstream geneShroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998
Downstream geneLOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109O01.T7 (MSMg01no109_o01.b1)MSMg01-109O01.TJ (MSMg01no109_o01.g1)
ACCAG322950AG322951
length735724
length of high quality
(start - end)
205 (85 - 289)286 (83 - 368)
definitionCHROMAT_FILE: MSMg01no109_o01.b1 PHD_FILE: MSMg01no109_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:15 2005CHROMAT_FILE: MSMg01no109_o01.g1 PHD_FILE: MSMg01no109_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGCCCNNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAG
AGGACCGCGGAATTCATTAATTTTCTTCTCAGCAAAGCCAAGGTGACTTC
TTAATTTCTCCCACAGTTCTGGCACTTATCTGTGTGCCCTCATTGCTTTC
TCACATGAGCAAGTCCTTCTATTAATTTGTTTTAGGGAATGCTGTTCGGT
TGACACAGACTTCTTTTCCAATATTCTTTGAACAGCTTCAACCCAGAACT
TCAATAACAAGCTGCAATAGTAAGTGCAATAACCATGGGTCTACATTAAT
TCAGCAGTTTGTGTGTGGAGCTGTCATCGCCTCTTGCCAATTTTCTGCAT
GCTATTAGATTTGCCCATCCTGAAAATGCGTCTGCCAGTTAACATAGTGT
ATTTTAGCTAAGATACTATTAGTTTTTCATTTACAAACACATCTGACATT
CTTCGTTTTTATCACCTTGTGACCCATCTCTTATACTTTCTGTTTTTGTT
AACACCCCTCCCTGTTCTGTCTTCCTCTCTCCCTGACACTACGATTCCCG
CCTGCTTTATCACCCTCGTTTCTCCCCACTCTGGATTTACTTCTACTTCC
TCCTGCCTGCTACTCTCTATCCTCTTCCTGCCTCCTATTCTCCTCTCTCC
CCGCCCTCCCCTCCACACCTTCAGCTCTGTTTTCTTTTCAGCCCTTTCCC
CTCGTCTTCCCCTTTGCGCCCCTCCCGCCTTCCCT
ATCTTCTNTTTTCGATGATAGTGAGAGGCCTGGCGACCGCCTGGTCCACA
ACATGAGGTGAACTATAGAATGTTCCGCGCAATTCCTTTCATTACGCAAT
TGGCTTAGGAGAATGCTAACGCAGCGTGTAGCGCTGCTATTTGGCCACAC
AAAGGACTGACAGACTTAGCGGGATATATCCATCTTTGTGCAGAGATTGG
GCAGTCATATACTCAGATGCTAAGACAAGGATTTTTGCCTGGTCAGGGGC
TAGGAAAGGAAGGACAAGGTATTAAAACTTTTGAAGGCCCTAAACCTCAC
TCTAACACAAGAGGCTTGGGGAATTTTCAGTAATGGCCGCTATCTTGCCT
GCATCCCATGCTGATAATATTCAATGACTTACTGACACCCCGGTGTGGGT
TGATCAGCAGCCTTTACCTAAAGAGAATATAGAAGCCACCTCTTCACTAG
TGTAGGACCAGTTACAGTCAAGACATTTAGTATAATCTCAGTCTCCTTGG
AATACTCCACTATTTGTTATTCAAGAAACAATACTTGCCATACGGCTATT
GCTACCAGATCTAAGAAAGGTTATTGCAATCTTGGCACCTATGCGTACTT
TTATATCCTGAGCTTCCCTCTCCTGTTATTCATTCCTAAAGGACTTTATA
ATTACCGCGGCACATTCTCATAAATTGTTTCCCCACCACTCCTTAGTATC
TTGGAGGACTGTTAAATATCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_o01.b1 MSMg01no109_o01.b1 CHROMAT_FILE:
MSMg01no109_o01.b1 PHD_FILE: MSMg01no109_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:15 2005
         (205 letters)



>mm_chrX_150079282_150079886
          Length = 605

 Score =  337 bits (174), Expect = 4e-97
 Identities = 198/206 (96%), Gaps = 2/206 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccaaggtgacttcttaatttctcccacagttctggcacttatctgtgtgccctcatt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aagccaaggtgacttcttaatttctcccacagttctgacacttatctgtgtgccctcatt 260

                                                                       
Query: 61  gctttctcacatgagcaagtccttctattaatttgttttagggaatgctgttcggttgac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 261 gctttctcacatgagcaagtccttctattaatttgttttagggaatgctgtttggttggc 320

                                                                       
Query: 121 acagacttcttttccaatattctttgaacagcttcaacccagaacttcaataac-aagct 179
           ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||
Sbjct: 321 acagacttcttttccaatattctttgaacagtttcaacacagaacttcaa-aaccaagct 379

                                     
Query: 180 gcaatagtaagtgcaataaccatggg 205
           |||||| |||||||||||||||||||
Sbjct: 380 gcaataataagtgcaataaccatggg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)