Query= MSMg01no110_c19.b1 MSMg01no110_c19.b1 CHROMAT_FILE:
MSMg01no110_c19.b1 PHD_FILE: MSMg01no110_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:40 2005
(584 letters)
>mm_chrX_12428703_12429686
Length = 984
Score = 781 bits (404), Expect = 0.0
Identities = 419/424 (98%), Gaps = 2/424 (0%)
Strand = Plus / Minus
Query: 161 ggtactgtgatggactgaacccatgatctcatctgtgccagccaagtatgcttccagtga 220
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ggtattgtgatggactgaacccatgatctcatctgtgccagccaagtatgcttccagtga 925
Query: 221 gctgtgtcttccaaccgtgccaccctttaacttcgagaaagggcctcactaacttaccca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gctgtgtcttccaaccgtgccaccctttaacttcgagaaagggcctcactaacttaccca 865
Query: 281 gactagcctaagaacttgtggtccttctgcctcagcctctcagataactagaattacaga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gactagcctaagaacttgtggtccttctgcctcagcctctcagataactagaattacaga 805
Query: 341 tttggaccaccaggcttagcttcttcagccttttgcctacccttctccgctcaacttgtc 400
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 804 tttggaccaccaggcttagcttcttcagccttttgcctacccttctctgctcaacttgtc 745
Query: 401 agagcttgtttctgtcttgcacaccaactgttgcgcagttcaggaagtttctaaggaaag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agagcttgtttctgtcttgcacaccaactgttgcgcagttcaggaagtttctaaggaaag 685
Query: 461 ttaattagagtggccgaatgttttcactccagataatggct-tgtggtctaactttctgc 519
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 684 ttaattagagtggccgaatgttttcactccagataatggctct-tggtttaactttctgc 626
Query: 520 atcacaaaaagaataagaaagtaaactaacagaaaattagatattttaaaaaatgtatta 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcacaaaaagaataagaaagtaaactaacagaaaattagatattttaaaaaatgtatta 566
Query: 580 tttt 583
||||
Sbjct: 565 tttt 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_c19.g1 MSMg01no110_c19.g1 CHROMAT_FILE:
MSMg01no110_c19.g1 PHD_FILE: MSMg01no110_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:40 2005
(514 letters)
>mm_chrX_12303669_12304582
Length = 914
Score = 859 bits (444), Expect = 0.0
Identities = 494/524 (94%), Gaps = 24/524 (4%)
Strand = Plus / Plus
Query: 1 aaggcctgcctgggttacatagcaagttccaggccacccaaagctacatgcctgtttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaggcctgcctgggttacatagcaagttccaggccacccaaagctacatgcctgtttcaa 259
Query: 61 aa-caattttaaataaataataataaaatttaactcacctttatagctacataataaaat 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 aaacaattttaaataaataataataaaatttaactcacctttatagctacataatagaat 319
Query: 120 caaaaatcccttattttaatcaatttcttttgtttaatattaactgactaaatagagtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaaaatcccttattttaatcaatttcttttgtttaatattaactgactaaatagagtat 379
Query: 180 atacaccatagttaggactattgtttgagcagtcatcgaaaacacttttgttcctagtaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atacaccatagttaggactattgtttgagcagtcatcgaaaacacttttgttcctagtaa 439
Query: 240 atatatatcttttgagaatacccacacaataaaagaacaagttagaaaccaaaaaaaaaa 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atatatatcatttgagaatacccacacaataaaagaacaagttagaaaccaaaaaaaaaa 499
Query: 300 aaaaca---------tttttttgagacaaggtttctctgtgtagccttggatatcctgaa 350
|||| | ||| |||||||||||||||||||||||||||||| ||||
Sbjct: 500 aaaaaaaaaaaaaaattt----gagacaaggtttctctgtgtagccttggatgtcct--- 552
Query: 351 actagctctgtagactaggctgaccttgaaataagggctaggaatatagttcactccata 410
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 553 -------ctgtagactaggctgaccttgaaataagggctaggaatgtagttcactccata 605
Query: 411 cacttgactagaaagcaaactttcaattcctctagggctccatattctaagtcattatat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacttgactagaaagcaaactttcaattcctctagggctccatattctaagtcattatat 665
Query: 471 agatacatattccaggtcattatatagatatactgtcacaaata 514
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 666 agatacatattccaggtcattatgtagatatactgtcacaaata 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
