Query= MSMg01no111_n05.b1 MSMg01no111_n05.b1 CHROMAT_FILE:
MSMg01no111_n05.b1 PHD_FILE: MSMg01no111_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:38 2005
(325 letters)
>mm_chrX_113350429_113351154
Length = 726
Score = 538 bits (278), Expect = e-157
Identities = 311/330 (94%), Gaps = 15/330 (4%)
Strand = Plus / Minus
Query: 1 acctggcttcatttcctgta-tttttctaacactggagcttttgactgagtgtattttat 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acctggcttcatttcctgtattttttctaacactggagcttttgactgagtgtattttat 287
Query: 60 agtttcggtttatcttctttttatttaaaagtttacctttgtatatatgtacatatgtat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agtttcggtttatcttctttttatttaaaagtttacctttgtatatatgtacatatgtat 227
Query: 120 gtatttgtagctgctatttaaaaatatgtttttattttatgtgtattaatgtttgcctgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtatttgtagctgctatttaaaaatatgtttttattttatgtgtattaatgtttgcctgc 167
Query: 180 atggaatgaat----atatacacatacatatacatgcacacacacacacacacacacaca 235
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atggaatgaatgaatatatacacatacatatacatgcacacacacacacacacaca---- 111
Query: 236 cacacatacacacacacacctacctgttgatacctgttttttgcagaattgagaaacagt 295
|| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 110 ------tagacacacacacctacctgttgatacctgttacctgcagaattgagaaacagt 57
Query: 296 cattgcaccccctggagccagagctacagg 325
||||||||||||||||||||||||||||||
Sbjct: 56 cattgcaccccctggagccagagctacagg 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 726
Length adjustment: 9
Effective length of query: 316
Effective length of database: 717
Effective search space: 226572
Effective search space used: 226572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_n05.g1 MSMg01no111_n05.g1 CHROMAT_FILE:
MSMg01no111_n05.g1 PHD_FILE: MSMg01no111_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:38 2005
(586 letters)
>mm_chrX_113231540_113232525
Length = 986
Score = 1112 bits (575), Expect = 0.0
Identities = 584/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Plus
Query: 1 taacatatttaccctacatacccatcaatgtatttgaaagtgctttgagttattgctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 taacatatttaccctacatacccatcaatgtatttgaaagtgctttgagttattgctttc 259
Query: 61 tttcagttattactataaaaaattcattttt-aacctcatttgaacctggtgtttgggga 119
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 tttcagttattactataaaatattcattttttaacctcatttgaacctggtgtttgggga 319
Query: 120 gacctaaatctatatttctggtcaatgatcactcatgtttagtaacagaatgaactgaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacctaaatctatatttctggtcaatgatcactcatgtttagtaacagaatgaactgaga 379
Query: 180 tgagatcctttgagatcaggttgagatgagtgttatgtttttgcattgtcattattattc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagatcctttgagatcaggttgagatgagtgttatgtttttgcattgtcattattattc 439
Query: 240 aatatgctatattatatattggattaaaataataaattatgcatttgtcactatctcaaa 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 aatatgctatattatatattggattaaaataataaagtatgcatttgtcactatctcaaa 499
Query: 300 aatccatctaaatacaatacttatatatctacatagttcttatattcttataagagatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatccatctaaatacaatacttatatatctacatagttcttatattcttataagagatat 559
Query: 360 actttaatatcttgttttatgtaaatcaaagatccttactaattcaggaaggtaattcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actttaatatcttgttttatgtaaatcaaagatccttactaattcaggaaggtaattcat 619
Query: 420 tagcctgattgtaaggattgaaacaaccatagaggtgcactaagtggtactcacatgttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagcctgattgtaaggattgaaacaaccatagaggtgcactaagtggtactcacatgttg 679
Query: 480 gtggcaaccaacagctgtctaattgaacttaaggcctacttaaaataaaggaatttatac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtggcaaccaacagctgtctaattgaacttaaggcctacttaaaataaaggaatttatac 739
Query: 540 ctggtccccaaaacctagtcaattttctcaggctagtgaggtcatgg 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctggtccccaaaacctagtcaattttctcaggctagtgaggtcatgg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
