BAC Information

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BAC

Clone NameMSMg01-112C04
ChromosomeX (Build37)
Map Location 65,328,995 - 65,329,240
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
Downstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C04.T7 (MSMg01no112_c04.b1)MSMg01-112C04.TJ (MSMg01no112_c04.g1)
ACCAG324628AG324629
length749767
length of high quality
(start - end)
247 (37 - 283)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no112_c04.b1 PHD_FILE: MSMg01no112_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:12 2005CHROMAT_FILE: MSMg01no112_c04.g1 PHD_FILE: MSMg01no112_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGC
TTACAGCCTCTACGTAAATTCCAGCTGTTTTTCTGAAATGGTTGATCAAA
GTGGAGTGGGGTTGGGAAACAAGAACTCATTGGATTCTACTTACCATTTT
TCTTCAATTGCCCCAGCCTGGAAGAGGGCAATGAATACAAGAGGTTGAGA
ACAGAGGTATACATGAGGGTATGCTGCTCCTGAAAAAAAATTCTGCAGAG
AAAAATCTATCTTTTTCCATTTACCACGGATATAGTTTGTAGCTGGGTTC
CATCTTCATTAGGATCAAAGAATACCACCGAGTCCCCTGAATTTGTCTTC
TTTCTGTCTCACATCTCCTGCCAAAAGTCACATAAAATGCTCAGAATTTG
AGGTCAGCGAGTCCCTTGTATATGGAGGCAGGTAATCTCCCCCAGAATAG
TCCTCCCCGCCCGCTCCGTACTTTCTTTTTGTTGAGCAATACTTCGGCCT
TACGCCGTTTCCCCCAAATGGTCCCACAGACCGCAATTGTGTCTCCCCTG
TCCCCCCCCTCGACCGTGGTTTGTCCCTTGTCGCATCGCGTTTAGGATTG
TTCTTCCCTGCCCCTCCCCGTATCTCTCACCCTGGTTTTCCTGACATCTT
CCTCTCACTTTGTTTAATTTTTTTCCTTCACCCACCCCTGGTCTCGTTCG
CCGGGTCTTTTCTCCGGGTTCCCATTTCTGCGCTTCTTCCCTTAAGCTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTGTATACCTGTCTCTCCTCTTG
GGTTTTTCTTAGATCTGTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTTTG
CAAGAACACTTCTTGTTTACTACTATATTTAAGGATAAGTGATTTATTAT
GCTTTCTATTTGTAGTGAAGTAGTTAGCTTGCTTTGTTATGTGTATATGT
ATTTTCCCACTTGTATAAAAACATGTACAACATATGTAGCATGTTGATTA
TTATGCAACGTCCTTACTATATAATATATAGTATCATGTGTAACAAATAT
GTAATTTAAAATACAATTTAATACAGAAAATAATATCATACTATGTGATT
TAACGTCTTATATATTTTATACCCTTTCTCCTCTATATTCATTACCTCCT
GAACATGTTACACTACGTATTACGTGTCCTTCTTTTTTACCATAGCGCCT
CCCCCCCTTTTCAGATATTATCCTTTGATATCTATCCTTTATTCTCCCTT
ATACATCTTTTTTTGCTCTCCATCCCTTCTGTTCTGTTTTGATCCCCTTT
TTTTTTTTCCCCCTTTTGCGACCATACTGATTCTTTTGTCCCCTCTTCGT
TTATCTAAGTTCTGCCCTACCAATAATACCCCCCCTTCTATTCTCTTACT
TTAACCTTATCCCCCCTTTTTTTCATCCCTTTCCCCATTTCTCCGGATTC
TTCTTTTTCCCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c04.g1 MSMg01no112_c04.g1 CHROMAT_FILE:
MSMg01no112_c04.g1 PHD_FILE: MSMg01no112_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:12 2005
         (246 letters)



>mm_chrX_65328720_65329365
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgtatacctgtctctcctcttgggtttttcttagatctgttttttgtttgtttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acctgtatacctgtctctcctcttgggtttttcttagatctgttttttgtttgtttgttt 462

                                                                       
Query: 61  gtttttgtttttttgcaagaacacttcttgtttactactatatttaaggataagtgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtttttgtttttttgcaagaacacttcttgtttactactatatttaaggataagtgattt 402

                                                                       
Query: 121 attatgctttctatttgtagtgaagtagttagcttgctttgttatgtgtatatgtatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attatgctttctatttgtagtgaagtagttagcttgctttgttatgtgtatatgtatttt 342

                                                                       
Query: 181 cccacttgtataaaaacatgtacaacatatgtagcatgttgattattatgcaacgtcctt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 341 cccacttgtataaaaacatgtacaacatatgtagtatgttgattattatgcaatgtcatt 282

                 
Query: 241 actata 246
           ||||||
Sbjct: 281 actata 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)