Query= MSMg01no112_f24.b1 MSMg01no112_f24.b1 CHROMAT_FILE:
MSMg01no112_f24.b1 PHD_FILE: MSMg01no112_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:31 2005
(585 letters)
>mm_chrX_82021000_82021985
Length = 986
Score = 971 bits (502), Expect = 0.0
Identities = 553/580 (95%), Gaps = 20/580 (3%)
Strand = Plus / Plus
Query: 7 ggaattctttacatctacctattttagtttatcttgacacttgactgaagtagaggtatc 66
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctttacatctacatattttagtttatcttgacacttgactgaagtagaggtatc 266
Query: 67 actcattccatagcagtagcacagcaaaggtagatattataaaataaaataaggagcact 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actcattccatagcagtagcacagcaaaggtagatattataaaataaaataaggagcact 326
Query: 127 agggtgatt-tccattggaatatttttcatattgaatgtcactgcaatttttaaaaatgt 185
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agggtgattgcccattgaaatatttttcatattgaatgtcactgcaatttttaaaaatgt 386
Query: 186 ttcaaaatatcctgagaaaacaaccctgtttctatagattatagcacattatatactcaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcaaaatatcctgagaaaacaaccctgtttctatagattatagcacattatatactcaa 446
Query: 246 aaatgtatggtattcttttgtgaggtatattttgtgagagcatcagaaatcattcatgta 305
||||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct: 447 aaatgtatggtgttc-attg---------ttttgtgagagcatcagaaatcattcatgta 496
Query: 306 tttcagaaaatgaaagcaacagttgtgcaaaaaatattctacatagaacacaaattctat 365
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 tttcagaaaatgaaagcaacagttgtgc-aaaaatattctacatagaacacaa------- 548
Query: 366 catattgctccttacttcaaaatttttgatcatgtacatatatattactcatccatttgt 425
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 -atattgctccttagttcaaaatttttgatcatgtacatatatattactcatccatttgt 607
Query: 426 ttgctaacctcttctcttcttttgttcctcttatgatccactcccatcctgtatctttct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgctaacctcttctcttcttttgttcctcttatgatccactcccatcctgtatctttct 667
Query: 486 caccaagcaacattctagttcttctacaacaaggagttctgagcaactatattctgcttt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 668 caccaagcaacattctagttcttctacaacaaggagttctgagcaactatattttgcttt 727
Query: 546 ccaatgcagtttgatttctagcagttttctgtaacttgtg 585
||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccaatgcagtttgatttctagcagttttctgtaacttgtg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_f24.g1 MSMg01no112_f24.g1 CHROMAT_FILE:
MSMg01no112_f24.g1 PHD_FILE: MSMg01no112_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:31 2005
(581 letters)
>mm_chrX_82179221_82180201
Length = 981
Score = 1035 bits (535), Expect = 0.0
Identities = 544/547 (99%)
Strand = Plus / Minus
Query: 35 gtgaatgtgtgttttgcctgcatttatgtgtgtgttctatattcatgtattatgcccaaa 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gtgaatgtgtgttttgcctgcatttatgtgtgtgttctatattcatgtattatgcccaaa 922
Query: 95 gaggccagaagagcacatcagatctcctggacctggagttatggatgggttgtgagccac 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaggccagaagagcacatcagatctcctggacctggagttatggatgggttgtgagccac 862
Query: 155 catgtgggttcaaggaatcaaattctggtcttctgcaggatctgacagggctctcatctt 214
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 861 catgtgggttcaaggaatcaaattctggtcttctgcagaatctgaaagggctctcatctt 802
Query: 215 ctgagtcagcactgcaatccatgactttccatttctattgaattgtaactgaggaaaaaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgagtcagcactgcaatccatgactttccatttctattgaattgtaactgaggaaaaaa 742
Query: 275 tatgttctgatgtaaggtttggaatgagtatttgagatatctggtatagacctggccagg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgttctgatgtaaggtttggaatgagtatttgagatatctggtatagacctggccagg 682
Query: 335 gttcatcatcctggccagtatttaataaagtttgcttcaaatttggcttaaaaaatatgg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttcatcatcctggccagtatttaataaagtttgcttcaaatttggcttaaaaaatatgg 622
Query: 395 tagtgatcttattctcgcctggtgggattaacagctttgtggccaaacaacctgaccttc 454
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tagtgatcttattctcgcctggtgggatttacagctttgtggccaaacaacctgaccttc 562
Query: 455 tttagtactagacagactgggagctcttcttgaaattatgttttcttaacattaggacac 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagtactagacagactgggagctcttcttgaaattatgttttcttaacattaggacac 502
Query: 515 ttaggagtttaaaagaaattttcaggttaaattttgggaacccagggttaatgcaaggtt 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggagtttaaaagaaattttcaggttaaattttgggaacccagggttaatgcaaggtt 442
Query: 575 cactctg 581
|||||||
Sbjct: 441 cactctg 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
