BAC Information

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BAC

Clone NameMSMg01-113H07
ChromosomeX (Build37)
Map Location 114,726,127 - 114,726,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
Downstream geneLOC665066, EG624388, ENSMUSG00000072994, LOC100039551, Tgifx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H07.T7 (MSMg01no113_h07.b1)MSMg01-113H07.TJ (MSMg01no113_h07.g1)
ACCAG325589AG325590
length688690
length of high quality
(start - end)
638 (51 - 688)189 (121 - 309)
definitionCHROMAT_FILE: MSMg01no113_h07.b1 PHD_FILE: MSMg01no113_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:53 2005CHROMAT_FILE: MSMg01no113_h07.g1 PHD_FILE: MSMg01no113_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGGTTTGCTGATTTTTCCCATATGTTTATTTGTTTGGA
TTTTCTTTTATTAATCTTATGGATCTTTTGCTTGTACAATATGGTTTCTG
ATACTGTGGGTTTTTTTTTTAATACGTTTTGAGTTTGCATGTATATGTTT
ATTTGTGTTTTCTTCTGTCTACTGTTTTTCTCTTTTTGTGTTTGTTGTTT
TGATTCTTTTAATTCTAGTTTGCTTGGATTTTTTTGACTGTTTTCTAAAT
AGTGAGATAAAGAAGTTTGTAGTTTGATGGATGTAGATGTGGATGTCACG
AGGATCTAGACGAAGATAGAAACCATGATCAGAATATGTTGTGTGACTTT
TCAATGAAACATAAAAATTAAAGTTACATGGCTACTTTGACAGGATTAAA
ATTATATACTGTCAGTCTTGAATTCACTGTATTTTGATATACATTGAATA
TTAATGACGTGCATATGCTGGTTATGAAAAGTTACTTCTAGTGAGGCTTA
TTTAGGAGTGAGGACCCATCATAGGCATCATCCTAAGAACTATACAAAAG
GAATGAAAGAAAAAAATGTGTCACCCTATTTCTAGTCAAATAATCTGAAA
AATTAACCATATTAATTTTTCAACCATATTACCCCACA
AATGAAGCGATAGGCCTGGNGGCGCCTGCTTCCGACCAGGGGNGAACTAN
ANAAGGTGCTGNGACCAGACACATANGGAAACGGACTGACTGCACTGACT
TCATGACCTCAATTGCCCCCAACTGCATTCAACTGAACTGTGCTGAACTA
CTCTGAACTGCACTGAACTACTCTGAACTGCACTGAACTCCACAGCATTG
CCTGAAATAAACTGAACTGGACTCACTGAAAAGCCCTCCCTCCTTTCTTA
CTCTGCACTGCTCTTAAGTAGTCTGTTTTGTTTTTCTGTCTATTCTCATA
AGGGTTGTGTGTTCCTCATTTCTGACTCATTCTGNCAGATCTTTCTCTTA
TTTGTCACTTCCCCCGGCCCTCAATTGGAAGTCATTTTCAAATATGCCTT
CTTCGTTCTACAAACTAAATGCATTTTCATTGTTTCTGATTAAAGGTGTG
TACTAATAGTGTGTCTATATTCCAGCCACAGGGATTAAAAGTATGTCATT
CCAGCTGGATTGCATAGGCCTAGAAACATTTTATATATGATCACTTGCCA
TAGCAGTCATGGTTCTAGATGAAAATTTCTACATCGCCATTTGATCCTAT
GAATATATACTAAAATATAAACAACACACTTAGCTTTGGGAGTACAACTC
AGTTGTTATACTATTTACTTAACACGCACGATGCTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h07.b1 MSMg01no113_h07.b1 CHROMAT_FILE:
MSMg01no113_h07.b1 PHD_FILE: MSMg01no113_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:53 2005
         (638 letters)



>mm_chrX_114725923_114726960
          Length = 1038

 Score = 1181 bits (611), Expect = 0.0
 Identities = 629/635 (99%), Gaps = 2/635 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtggtttgctgatttttcccat-atgtttatttgtttggattttcttttatta 63
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 838 gaattcagtggtttgttgatttttcccatcatgtttatttgtttggattttcttttatta 779

                                                                       
Query: 64  atcttatggatcttttgcttgtacaatatggtttctgatactgtgggttttttttttaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atcttatggatcttttgcttgtacaatatggtttctgatactgtgggttttttttttaat 719

                                                                       
Query: 124 acgttttgagtttgcatgtatatgtttatttgtgttttcttctgtctactgtttttctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acgttttgagtttgcatgtatatgtttatttgtgttttcttctgtctactgtttttctct 659

                                                                       
Query: 184 ttttgtgtttgttgttttgattcttttaattctagtttgcttggatttttttgactgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttttgtgtttgttgttttgattcttttaattctagtttgcttggatttttttgactgttt 599

                                                                       
Query: 244 tctaaatagtgagataaagaagtttgtagtttgatggatgtagatgtggatgtcacgagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tctaaatagtgagataaagaagtttgtagtttgatggatgtagatgtggatgtcacgagg 539

                                                                       
Query: 304 atctagacgaagatagaaaccatgatcagaatatgttgtgtgacttttcaatgaaacata 363
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atctagacgaaggtagaaaccatgatcagaatatgttgtgtgacttttcaatgaaacata 479

                                                                       
Query: 364 aaaattaaagttacatggctactttgacaggattaaaattatatactgtcagtcttgaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaattaaagttacatggctactttgacaggattaaaattatatactgtcagtcttgaat 419

                                                                       
Query: 424 tcactgtattttgatatacattgaatattaatgacgtgcatatgctggttatgaaaagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcactgtattttgatatacattgaatattaatgacgtgcatatgctggttatgaaaagtt 359

                                                                       
Query: 484 acttctagtgaggcttatttaggagtgaggacccatcataggcatcatcctaagaactat 543
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 358 acttctagtgaggcttatttaggagtgaggacccatcagaggcatcaacctaagaactat 299

                                                                       
Query: 544 acaaaaggaatgaaagaaaaaaatgtgtcaccctatttctagtcaaataatctgaaaaat 603
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acaaaaggaatgaaag-aaaaaatgtgtcaccctatttctagtcaaataatctgaaaaat 240

                                              
Query: 604 taaccatattaatttttcaaccatattaccccaca 638
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 taaccatattaatttttcaaccatattaccccaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)