BAC Information

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BAC

Clone NameMSMg01-114D04
ChromosomeX (Build37)
Map Location 125,160,647 - 125,161,032
singlet/doubletsinglet
Overlap genenone
Upstream gene4930412D23Rik, LOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D04.T7 (MSMg01no114_d04.b1)MSMg01-114D04.TJ (MSMg01no114_d04.g1)
ACCAG326139AG326140
length689756
length of high quality
(start - end)
569 (51 - 619)386 (73 - 458)
definitionCHROMAT_FILE: MSMg01no114_d04.b1 PHD_FILE: MSMg01no114_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005CHROMAT_FILE: MSMg01no114_d04.g1 PHD_FILE: MSMg01no114_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTACCCGTGTGCCCCATTTTTTAATGGTGTTATTT
GAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAG
TACCCTATCAGATTTAGGATTGTTAAAAATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTATTCTTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAAT
TTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGC
TGTTCTGTTTAGGAATTTTTCCCCTATGCCCATATCTTTGAGGCTTTTCC
CCACTTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCT
TTGGTCCACTTAGGCTTGAGCTTTGTACAAGGAGATACGAATGGATCAAT
TCACATTCTTCTACATGATAACTGCCAGTTGTGCCAGCTCCATTTGCTGA
AAATGTTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATC
AAGTGACCATAGCTGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCCA
TTGATCTACCTATCACTGTACCAGTACCATGCAGTTTTTAATCACAATCG
CTCTGTAGCACAGCTTAACGTCAGACATGGTGATTCCAC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTTATCTAATAAAAACTTTCTAAAT
AAAATTATATAAATATATAAGTATATATATTTACTGTACTTAAATATGCA
TTGCATCAAATTTTATCTGTTAATTACATTAAATTTATAGTTCAGCAGCA
ACAAGAATATTCATATTATGCAATAGGTTTGCAGGAAATACATACCTGTA
TTCATTTTTAATACCTTTATTCAAAACCAGGGATACATACTGCCTATTTT
AAAGGGAAAGATTAATGTTCCATACTATAACAAAGCTAGGCTTTTATACA
TTCTTGGGCCAAAAGCATACTGAAGGAAAATTATCTCTTCTGGGGACTTT
GTGAATCATTAGTATCTTTTCAATTTTGTGTCATCAGTGGAAAATTTACT
TGTAAGAGCAGTCATTTGCTATGCATATTAGATTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTCATCTCATTTTATTCCACTCCATTCC
ATCCCCCCCCCCCCCTCTCTTTCTTTCACCGTCTCTCCCCCTTTCCTCCC
CTTCCTTTACCCCCCCCTCCCTCCCTATCCACCCCTTCCCCTTATTCCCC
CTCCCCCCCCCCCTTTCCTCCTTCTATTCCCATTACCTCCCCCCTCATTT
CTCTCTCGCATTCTCCCCCTCTATATTCCCCCTCCCCACTTCCCCCCCCT
TTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d04.g1 MSMg01no114_d04.g1 CHROMAT_FILE:
MSMg01no114_d04.g1 PHD_FILE: MSMg01no114_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:50 2005
         (386 letters)



>mm_chrX_125160447_125161232
          Length = 786

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttatctaataaaaactttctaaataaaattatataaatatataagtatatatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttatctaataaaaactttctaaataaaattatataaatatataagtatatatattt 260

                                                                       
Query: 61  actgtacttaaatatgcattgcatcaaattttatctgttaattacattaaatttatagtt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtacttaaatatgcattgcatcaaattttatctgttaattacattaaatttatagtt 320

                                                                       
Query: 121 cagcagcaacaagaatattcatattatgcaataggtttgcaggaaatacatacctgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcagcaacaagaatattcatattatgcaataggtttgcaggaaatacatacctgtatt 380

                                                                       
Query: 181 catttttaatacctttattcaaaaccagggatacatactgcctattttaaagggaaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttttaatacctttattcaaaaccagggatacatactgcctattttaaagggaaagat 440

                                                                       
Query: 241 taatgttccatactataacaaagctaggcttttatacattcttgggccaaaagcatactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatgttccatactataacaaagctaggcttttatacattcttgggccaaaagcatactg 500

                                                                       
Query: 301 aaggaaaattatctcttctggggactttgtgaatcattagtatcttttcaattttgtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaaaattatctcttctggggactttgtgaatcattagtatcttttcaattttgtgtc 560

                                     
Query: 361 atcagtggaaaatttacttgtaagag 386
           ||||||||||||||||||||||||||
Sbjct: 561 atcagtggaaaatttacttgtaagag 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)