Query= MSMg01no114_h24.b1 MSMg01no114_h24.b1 CHROMAT_FILE:
MSMg01no114_h24.b1 PHD_FILE: MSMg01no114_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:12 2005
(465 letters)
>mm_chrX_136428451_136429315
Length = 865
Score = 839 bits (434), Expect = 0.0
Identities = 458/466 (98%), Gaps = 2/466 (0%)
Strand = Plus / Plus
Query: 1 ggtattaatcaacaagaactagaattgtaccggatcaacactgtatgaagtaaaaagtaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ggtattaatcaacaagaactagaattgtaccggatcaacactgtatgaagtaaaaactaa 260
Query: 61 aacagcttgcaacacatagagaacgcatggatctagatgaataaagacatactgcggttt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagcttgcaacacatagagaacgcatggatctagatgaataaagacatactgcggttt 320
Query: 121 ccttgaggctcatgaagatgaggcaattagaaaaaaaagtcaatagttacagagattcag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccttgaggctcatgaagatgaggcaattagaaaaaaa-gtcaatagttacagagattcag 379
Query: 181 ctgtcactgtgaagagtgacatacagaacatggaaacatgccttgagttaggccaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtcactgtgaagagtgacatacagaacatggaaacatgccttgagttaggccaggttg 439
Query: 241 aaatgctaaagaaccctcagatttcccaagatgccactggtgaagagggaacatcaatga 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgctaaagaaccctcagatgtcccaagatgccactggtgaagagggaacatcaatga 499
Query: 301 tgacataatgaggttatactgtagactgtgtaactgtgggcataggaagctggaaaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 tgacataatgaggttatactgtagactgtgtaactgtgggcataggaagttggaaaaaaa 559
Query: 361 -gagccattaacatgtgtgcctccatattacgggagtagaaattgtggcttgaaacctga 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 agagccattaacatgtgtgcctccatattttgggagtagaaattgtggcttgaaacctga 619
Query: 420 ataaatatgactattttgatacctcagatattactatttgtttagt 465
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataaatatgactattttgatacctcagatattactatttgtttagt 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_h24.g1 MSMg01no114_h24.g1 CHROMAT_FILE:
MSMg01no114_h24.g1 PHD_FILE: MSMg01no114_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:12 2005
(509 letters)
>mm_chrX_136589771_136590679
Length = 909
Score = 977 bits (505), Expect = 0.0
Identities = 508/509 (99%)
Strand = Plus / Minus
Query: 1 atctttcttccatttgaggcacacatttatcttcctaatgttatatgctcaagttattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atctttcttccatttgaggcacacatttatcttcctaatgttatatgctcaagttattat 650
Query: 61 caaaatacaattattatggccatttccttcacttgatagttgcttccctttgggggaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 caaaatacaattattatggccatttccttcacttgatagttgcttccctttgggggaagc 590
Query: 121 actgtgtgcagtgttacagtgtctgagtttcctcggctacagaatggggattggaattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 actgtgtgcagtgttacagtgtctgagtttcctcggctacagaatggggattggaattcc 530
Query: 181 cttctaggagttattaaggcgagggaaggggttacattttcccttttacaattagtgtct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 cttctaggagttattaaggcgagggaatgggttacattttcccttttacaattagtgtct 470
Query: 241 gtttataggagactcaggagtttgagtgacagactgttgttttctggagtgtcttaccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtttataggagactcaggagtttgagtgacagactgttgttttctggagtgtcttaccat 410
Query: 301 catttattgatcctagatctgggtcctactacccaaaatgttcctaaggtcaatagatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 catttattgatcctagatctgggtcctactacccaaaatgttcctaaggtcaatagatga 350
Query: 361 caattggtaagctacagtgaagttagtttgcatgctgataaataagatgatttttataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 caattggtaagctacagtgaagttagtttgcatgctgataaataagatgatttttataat 290
Query: 421 tgaaattcaatttatgttcaatttcttgcccaactgaaagtggtctataatgaccctgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgaaattcaatttatgttcaatttcttgcccaactgaaagtggtctataatgaccctgga 230
Query: 481 tttgctgatccttcactgacaacatcagg 509
|||||||||||||||||||||||||||||
Sbjct: 229 tttgctgatccttcactgacaacatcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
