BAC Information

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BAC

Clone NameMSMg01-115N17
ChromosomeX (Build37)
Map Location 165,508,191 - 165,563,177
singlet/doubletdoublet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N17.T7 (MSMg01no115_n17.b1)MSMg01-115N17.TJ (MSMg01no115_n17.g1)
ACCAG327382AG327383
length774721
length of high quality
(start - end)		403 (46 - 448)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no115_n17.b1 PHD_FILE: MSMg01no115_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:55 2005CHROMAT_FILE: MSMg01no115_n17.g1 PHD_FILE: MSMg01no115_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,562,841 - 165,563,177)(165,508,191 - 165,508,664)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATTTCTAGAATTCTAATCCTCAATGTGTTTAATATGTATTCAT
CAATAAAATACATTGACTGGAATGGTTGTTAAAATACATGCTGAAGTTCT
AAGTCAGAATCACTGCCCATCTGAATGTCTCATGGGCTCCGTCCAATGGA
TGGATGTGAGCATCCACCTCTGCATTTGTAAGGCGCTGGCAGAGCCTTTC
AGGAGACAGCTATATCAGGCTCCTCTCGGCAAGCACTTGTTGGTATCCAC
AACAGTGTTTGGGTTTGGTGACTGTAAATGGGATGGATCCCCAGGTGAGT
CAGTCTCTAGATGGTCATTTATTCAGTTTCTGCTCCATAGTTTTTCTCTG
TAACTCCTTCCATGCCCCCCCTCCCCCCATCCTTCTAAGATGGATAAGTA
TCCACACTTTGGTTGTCCCTCTTGACCCTCATGCGCCCTGTGAATTGTGT
CCCGCCCCCCTTCACTACTGTCTGCACTTCACCCCTCCATCTTGTTACTT
TATCCCCCCTTACCCCCCCCCCCCCCCCCCCCCTCCCCTGCCCCCACCCT
TCCTATATATAATTCCCCTCCCGCCCCCTCTTCTTCTCCTCCCACTTTTC
GCCTCTTCCCCCCCCCGCCTCGCACTTTTTTTCCCCTCCCCCTCTTCTCC
CCCCATTTTCCCCGCCCTTCTAACCCGCCCTTNTGCGGGCGTCTTTTTCC
TCCGCCCTCTCTCCCCCCCCCCCG

TTTCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTGATTGTCTCCCTCCCACAA
TGCTGTACTTACAAACATCACTCTAGCCTACTATTTAATAAATCCTACTT
TAGAGAAAGAACAGATCTCTGTGTGTGTCCTCTTTTAAGTCCAAATGGAC
AAGCTCTGATTTTTCTTGAGCTTTTGTGTTTCAATACCACTTAGCAAATA
TTCTTAAGGAAATAAACGGTAGCAATATTTTGAACAGTGGCTTTGGAGTT
CTAGTGGGAATTGCTCTAAAGCAGTGAGTCATCAAGGGTGCTAAGCTGTT
GATCTGTGGATTGAAAACCTGTTTGAAGCGCTAGGTTAACAGAGAACAGG
CACCTCTTAGAACGTTCATCTCAAGGATTCAAAACCACACTGTCCATATG
TTGTGTTTCTCTTCAGGTGACATCATTTTGTATTTGTATTTCTGCAACTC
TCACTTGGTATTTTTGAAACCCAAAGTCATGTGGATAATAACCTGCAGTG
AGTTACTAACATAAAATGAAAGCCCAGCTATACCACCCGAAGATATAATT
CTGTAAACATACTAATATGATTATTAACACACTTCATATTCTTCTTTCTA
ACTGATTTAACAACACCATTAACCTGCTTTCCTCTGCACGCTTGAACGTT
TCCCCTTCCATTATTTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n17.b1 MSMg01no115_n17.b1 CHROMAT_FILE:
MSMg01no115_n17.b1 PHD_FILE: MSMg01no115_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:55 2005
         (403 letters)



>mm_chrX_165562841_165563643
          Length = 803

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatttctagaattctaatcctcaatgtgtttaatatgtattcatcaataaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattcctatttctagaattctaatcctcaatgtgtttaatatgtattcatcaataaaat 278

                                                                       
Query: 65  acattgactggaatggttgttaaaatacatgctgaagttctaagtcagaatcactgccca 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcattgactggaatggttgttaaaatacatgctgaagttctaagtcagaatcactgccca 218

                                                                       
Query: 125 tctgaatgtctcatgggctccgtccaatggatggatgtgagcatccacctctgcatttgt 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 217 tctgaatgtctcatgggctccgtccaatggatggctgtgagcatccacctctgcatttgt 158

                                                                       
Query: 185 aaggcgctggcagagcctttcaggagacagctatatcaggctcctctcggcaagcacttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aaggcgctggcagagcctttcaggagacagctatatcaggctcctctcggcaagcacttg 98

                                                                       
Query: 245 ttggtatccacaacagtgtttgggtttggtgactgtaaatgggatggatccccaggtgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ttggtatccacaacagtgtttgggtttggtgactgtaaatgggatggatccccaggtgag 38

                                                
Query: 305 tcagtctctagatggtcatttattcagtttctgctcc 341
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tcagtctctagatggtcatttattcagtttctgctcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_n17.g1 MSMg01no115_n17.g1 CHROMAT_FILE:
MSMg01no115_n17.g1 PHD_FILE: MSMg01no115_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:55 2005
         (474 letters)



>mm_chrX_165507991_165508864
          Length = 874

 Score =  893 bits (462), Expect = 0.0
 Identities = 471/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgattgtctccctcccacaatgctgtacttacaaacatcactctagcctactattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgattgtctccctcccacaatgctgtacttacaaacatcactctagcctactattt 260

                                                                       
Query: 61  aataaatcctactttagagaaagaacagatctctgtgtgtgtcctcttttaagtccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaatcctactttagagaaagaacagatctctgtgtgtgtcctcttttaagtccaaat 320

                                                                       
Query: 121 ggacaagctctgatttttcttgagcttttgtgtttcaataccacttagcaaatattctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacaagctctgatttttcttgagcttttgtgtttcaataccacttagcaaatattctta 380

                                                                       
Query: 181 aggaaataaacggtagcaatattttgaacagtggctttggagttctagtgggaattgctc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaataaacggtagcaacattttgaacagtggctttggagttctagtgggaattgctc 440

                                                                       
Query: 241 taaagcagtgagtcatcaagggtgctaagctgttgatctgtggattgaaaacctgtttga 300
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagcagtgcgtcatcaagggggctaagctgttgatctgtggattgaaaacctgtttga 500

                                                                       
Query: 301 agcgctaggttaacagagaacaggcacctcttagaacgttcatctcaaggattcaaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcgctaggttaacagagaacaggcacctcttagaacgttcatctcaaggattcaaaacc 560

                                                                       
Query: 361 acactgtccatatgttgtgtttctcttcaggtgacatcattttgtatttgtatttctgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactgtccatatgttgtgtttctcttcaggtgacatcattttgtatttgtatttctgca 620

                                                                 
Query: 421 actctcacttggtatttttgaaacccaaagtcatgtggataataacctgcagtg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctcacttggtatttttgaaacccaaagtcatgtggataataacctgcagtg 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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