BAC Information

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BAC

Clone NameMSMg01-117B07
ChromosomeX (Build37)
Map Location 130,735,989 - 130,736,384
singlet/doubletsinglet
Overlap geneArl13a
Upstream geneLOC100040794, Pcdh19, LOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx
Downstream gene4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117B07.T7 (MSMg01no117_b07.b1)MSMg01-117B07.TJ (MSMg01no117_b07.g1)
ACCAG328304AG328305
length713712
length of high quality
(start - end)
417 (49 - 465)443 (74 - 516)
definitionCHROMAT_FILE: MSMg01no117_b07.b1 PHD_FILE: MSMg01no117_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:31 2005CHROMAT_FILE: MSMg01no117_b07.g1 PHD_FILE: MSMg01no117_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGC
GGAATTCCAGAGCATTTTCGACTACACAGTGAGTGAGACCGTGTCTAACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACAGAAACAGATTAACGCATCCATGAATGTAAGCCGGCTGG
CAGGCTGCTTTAATAGGATTTCTAAGAGCAGGTTCTGCAAAAGGACGAAC
AAATTTACCTAACTACATCTTGCTACACTGTGCTCATTTCTCCTCTCTGT
TCATTTGTAGTAATTCCTAGCAAGATGCACAATGAAATGAGACCAACACA
AACAACGCTTCTACTAGATGATTACCACGTATCTATCTATGACCTAACTG
GAGACGTAAAAGGCCGTGAGAAATGGTCAAGCTACTATGCTCAGGCCCAC
GGGCTTATTTTCGCGGTGGATTCTAGTGACATAGCACGTATCCAGGAAGC
GAACATCATCTTAACTCGCATAATGTTTGACAAAAGGGTCTCAGGGAAAC
CCATCTTAATGTAAGTTTCTGCCTTTGGGGCCTGCTTTCCCTTATCCAAT
TTGTGCCGTGCAAAAGGTATAGAGATGAAGGGCATTTTTTTTGTCAGAAG
GTTCTAGACCTCTTTAGGCTCAATGACGTACAAAGACTCAGTTCACTGGT
GACTGTTTCCCAG
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCAGAAAGACGAATCCTGTTTTTTTA
ATCCAGTCTCTAAGTCATGTTATTGGAGAACTGAGGCCATTAATATTAAA
TTATTAATGAGTAGTGCTTATTAATTTCATTTATTGTTGTTGTTGTTGTC
GTAAGGGACCTGCACCCCCACCCATTTCGACTAAGTGCTCTAGGGGTATT
TACTCCTTGTGTCCTCTCAATTGTATGCTTCTCTTCAGGGTGAAGAATTG
CTTCTAGTGCCATCTGTAGAGATGGATGGGTGAACAGGAGTTGCTTAAAT
GTGCTTTCTTGTGAAATGGTTTTCTCTCGCTGGAGACTGGGATCATAGTT
TTGCTGGGTATAGTAGTCTATGCTGGCATCTGTAGTCTCTGGAAGCTTAT
AGAACATCTGTTCAGTCCCTTTCGGCTTTCACAGTCTCCACTGAAAAGTC
AGGTGTTATTATCAATGTAGATGTATTAAATAGAAGTTGTTCAGTAGTGA
AACAACATTTTAGAACAAATTTTTAGCGAAAATGGATCTTTCCTGGCATA
AATTAAAAAAAAAAAATTCAGATATCCCTCTGACGCTGAAGATGTCTATT
TAGGCCCCAGCAATCTACAATCTGAATATTTACCTAAATACTTACCTTCC
CATAAACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_b07.b1 MSMg01no117_b07.b1 CHROMAT_FILE:
MSMg01no117_b07.b1 PHD_FILE: MSMg01no117_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:31 2005
         (417 letters)



>mm_chrX_130735770_130736586
          Length = 817

 Score =  629 bits (325), Expect = 0.0
 Identities = 383/415 (92%), Gaps = 22/415 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccagagcattttc---gactacacagtgagtgagaccgtgtctaacacacacaca 60
           |||||||||||||    |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattccagagcag---ccaggactacacagtgagtgagaccgtgtctaacacacacaca 276

                                                                       
Query: 61  cacacacacacacacacacacacacacacacacacacacacacacacacacacagaaaca 120
           |||||||||||||||||||||||||||||||||||| |                ||||||
Sbjct: 277 cacacacacacacacacacacacacacacacacacaga----------------gaaaca 320

                                                                       
Query: 121 gattaacgcatccatgaatgtaagccggctggcaggctgctttaataggatttctaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaacgcatccatgaatgtaagccggctggcaggctgctttaataggatttctaagag 380

                                                                       
Query: 181 caggttctgcaaaaggacgaacaaatttacctaactacatcttgctacactgtgctcatt 240
           | |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||
Sbjct: 381 ccggttctgcaaaaggacaaacaaatttacctaactacatcttgctatgctgtgctcatt 440

                                                                       
Query: 241 tctcctctctgttcatttgtagtaattcctagcaagatgcacaatgaaatgagaccaaca 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tctcctctctgttcatttgtagtaattcctagcaagatgcacaaagaaatgagaccaaca 500

                                                                       
Query: 301 caaacaacgcttctactagatgattaccacgtatctatctatgacctaactggagacgta 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 caaacaacgcttctactagatgattaccaagtatctatctatgacctaactggagacgta 560

                                                                  
Query: 361 aaaggccgtgagaaatggtcaagctactatgctcaggcccacgggcttattttcg 415
           ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 561 aaaggccgtgagaaatggtcaagttactatgctcaggcccatgggcttattttcg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)