BAC Information

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BAC

Clone NameMSMg01-117F07
ChromosomeX (Build37)
Map Location 119,776,813 - 119,777,464
singlet/doubletsinglet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117F07.T7 (MSMg01no117_f07.b1)MSMg01-117F07.TJ (MSMg01no117_f07.g1)
ACCAG328491AG328492
length716710
length of high quality
(start - end)
669 (48 - 716)626 (75 - 700)
definitionCHROMAT_FILE: MSMg01no117_f07.b1 PHD_FILE: MSMg01no117_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005CHROMAT_FILE: MSMg01no117_f07.g1 PHD_FILE: MSMg01no117_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCAGATCTCCAAAGAAGACCTAATTCTAATTCAACTCAAAC
TATTCCACAAAATAGTAACAGAAGGTACTCTACCCAGTTTATTCTACGAA
GCCATAATTACTCTGATACCTAAACCACACAAAACCCAAAAAAGAAAGAG
AACATCAGACCAATTTTCCTTATGAATATGGATGGAAAAATACTCAATAA
AATTCTCACTAACCTAATCCAAGAATACATCAAATTGATCATCCATCAGG
ATCAAGTAGGCTTTATCCCAGGGATACAGGGATGATTTAATATATGGAAA
TCCATCAATATAATCCACCATATAATCAAACTAAAAGAAAAAAAACATGA
GATCATCTAATGAGATGCTGACAAAGCATTTGACAAACTCCAACATCCCT
TCATGAGAAAAGTCTTGGAATGATCAGGAATTCACAGCCCATACCTAAAC
ATAATAAAAGCAGCATACAGCAAACGAGTAGCCAACATCAAACTAAAATG
AGAGAAATTTGAAGCAATCCTACTAAAATCAGGGACTAGACAAAGCTGCC
CACTTTCTCCCTACATATTCAATATAGTACTTGAAGTCTTAGCCAAAGAA
ATTAGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGT
TAAAATATCACTATTC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGCCAGCCTCATCTACATAGTAAA
CTTGAAGCCATCATGGGAAATTTAAGCACCTGTTATAAAACTACTGGCAA
CCCCCAACAAAAATGAAGGAAAGGATTTATGTTTTATATATTACTTTAAT
ATTGCATATAATAGTGCCTTAATTTTTATTTCTGTTATCTGTTTTTATTT
TAGACAAAGACAAGATCTTCCTTGGTAATCTACAGATATATATATATATA
TATATTCTGATGTGTAGGTTTCCCTCTTGCACTTTGCCTTACAGAAGCTT
TTCAGTTTCATGAGGTACTACTTAACAATTGTTGAGCTTAGAGCCTGAGT
CACTGGTGTTCTTTTCAGGAAGTATCCCCCTGTGCCAATGTGTTCAAGGC
TATTTCTAATTTCTCTTCTTTTAGACTCAGTATATCTGATTTTATGTTGA
GGCCCTTGATCCACTTGGTGTTGAGATTTGTGCAGGATGATAAATATGTA
TCTATTTGTATTGTTCTACACTAAGACTGCCAGTTATACTAGCACCATTG
GTTGAAGATGGCTGTCCTCTGAGAAGCTCTACCAGTCTGACTGAGACAGA
TTCAGATACAACCAAGCATTGGAGTGAGATTGGGGACCCATATGGAAGAT
TGAGGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_f07.g1 MSMg01no117_f07.g1 CHROMAT_FILE:
MSMg01no117_f07.g1 PHD_FILE: MSMg01no117_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:51 2005
         (626 letters)



>mm_chrX_119776613_119777638
          Length = 1026

 Score = 1122 bits (580), Expect = 0.0
 Identities = 622/652 (95%), Gaps = 26/652 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagccagcctcatctacatagtaaacttgaagccatcatgggaaatttaagcacctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccagcctcatctacatagtaaacttgaagccatcatgggaaatttaagcacctgtt 260

                                                                       
Query: 61  ataaaactactggcaacccccaacaaaaatgaaggaaaggatttatgttttatatattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaactactggcaacccccaacaaaaatgaaggaaaggatttatgttttatatattac 320

                                                                       
Query: 121 tttaatattgcatataatagtgccttaatttttatttctgttatctgtttttattttaga 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tttaatattgcatataatagtgccttaatttttatttctgttatctctttttattttaga 380

                                                                       
Query: 181 caaagacaagatcttccttggtaatctacag----------------------atatata 218
           |||||||||||||||||||||||||||||||                      |||||||
Sbjct: 381 caaagacaagatcttccttggtaatctacagatatatatatatatatatatatatatata 440

                                                                       
Query: 219 tatatatatatattctgatgtgtaggtttccctcttgcactttgccttacagaagctttt 278
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tatatatatatattctgatgtgtaggttgccctcttgcactttgccttacagaagctttt 500

                                                                       
Query: 279 cagtttcatgaggtactacttaacaattgttgagcttagagcctgagtcactggtgttct 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtttcatgaggtactacttaacaattgttgagcttagagcctgagtcactggtgttct 560

                                                                       
Query: 339 tttcaggaagtatccccctgtgccaatgtgttcaaggctatttctaatttctcttctttt 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaggaagtatccccctgtgccaatgtgttcaaggctatttctaatttctcttctttt 620

                                                                       
Query: 399 agactcagtatatctgattttatgttgaggcccttgatccacttggtgttgagatttgtg 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agactcagtatatctgattttatgttgaggcccttgatccacttggtgttgagatttgtg 680

                                                                       
Query: 459 caggatgataaatatgtatctatttgtattgttctacactaagactgccagttatactag 518
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 caggatgataaatatgtatctatttgtattgttctacactaagactgccaattatactag 740

                                                                       
Query: 519 caccattggttgaagatggctgtcctctgagaagctctaccagtctgactgagacagatt 578
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 caccattggttgaagatggctgtcctctgagaagctctaccagtctgactaagacagatt 800

                                                               
Query: 579 cagatac----aaccaagcattggagtgagattggggacccatatggaagat 626
           |||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagatactcacaaccaagcattggagtgagattggggacccatatggaagat 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)