BAC Information

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BAC

Clone NameMSMg01-117H03
ChromosomeX (Build37)
Map Location 66,852,964 - 66,988,362
singlet/doubletdoublet
Overlap geneAff2, EG666577
Upstream geneLOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream gene1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117H03.T7 (MSMg01no117_h03.b1)MSMg01-117H03.TJ (MSMg01no117_h03.g1)
ACCAG328576AG328577
length699694
length of high quality
(start - end)
630 (53 - 682)594 (77 - 670)
definitionCHROMAT_FILE: MSMg01no117_h03.b1 PHD_FILE: MSMg01no117_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:00 2005CHROMAT_FILE: MSMg01no117_h03.g1 PHD_FILE: MSMg01no117_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,852,964 - 66,853,590)(66,987,880 - 66,988,362)
sequence
NNNNNAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAGTCTGCCCCTAGAATATTTATATAATTAATAATAG
ATTTCATAAGATATGTTTCTATTATATAATTTACAGTGCTTCCTATTTTT
TCCAAAATGGAAAATTTCTGAAAATAAAATATTTCAAAGCACTTGCAATC
AGTCTGATTATAGGCATTTTAGGTGTCCCCTCTCCCCATTGATAGGGATC
TACTTGAAATCACTGCCAAGGGATTGACTTAAGTTGAAAAATCAATTTGA
GGTAGTTGCATCACAAATAGAGAAGGTTGACAAGAATGTAGAGAGAGGAT
TGATTAATTGGACTCCTCAGAAATGTAAGAAAGGGGACATTTTATGTCTT
AAGAGACATATTTTCCAGTAGTATGTCTCAGAATGAATCTATTGAATTTA
AATGTGCTAATCTTGGTCTGCTTAAGAATTCCTATAATAATGATTCCTTT
AATAGTATGAAAATGCAAAGAAGTGAATCTCATGGTGATCATGAGAAACC
TGTTTTAAATTAGTACGACTTTAATTGATGTCATTGTCATTAGTTGTGAC
CCATGTACTACTATAGCTAAACAATTTCAGCTGGCTCAGGATATTCTTAA
ATTACTTGCTACAATATAAACAGCTGTGTGACTCAAGTCCTGTAAATTA
TTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTGGGTGTTGAGAGAGAGGACT
TGAGAGGTCAAATTTGAGTGACTCCCAGAAGTAGAGGCCATACCTCTAGA
CATGGAGAATTTATAAATGTTCAAATGCAACAATTACAAACATTGTATAA
CACTAAATAATAACAGTTAATTAAATTGTAACCTTATATGGGTGAGCTAA
TACACCACAAGATGTTTGAGTTCTAAATTCAAGAGTCTTAGAGTAAAATT
TCAGTTCCCTTAAAAAGTAATTCCGTGATTTCTGTGAGATGAATTTCTGT
GATTTTTCAAAAAGTCATTTAATTTCTTTGAGATGAAATTTCCTTCTCCA
TAAAATTTGTTAAATCATACCTACCTCTCAGAATATTATGAGCATACAGT
AATATGAACCTGTGAGCCTGTAATATGGCTTAGTACCACTGTACTAGGTA
GGATTGACTTCCACATTAGCAGCAGCACTGACTATGTAAACATGCATGTT
TGGACATCTCAGAGACCTGGAAGGACAATCATTGGACTGATACTGATTTG
ATTATATCAACATCTTGTTACATTGCGGCTAAGAAGAATTATTCTACATT
TGTAAACTATTTGTCACAGTGCATGTAAGTTAGTAGGTAACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_h03.b1 MSMg01no117_h03.b1 CHROMAT_FILE:
MSMg01no117_h03.b1 PHD_FILE: MSMg01no117_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
         (630 letters)



>mm_chrX_66852761_66853790
          Length = 1030

 Score = 1174 bits (607), Expect = 0.0
 Identities = 622/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagtctgcccctagaatatttatataattaataatagatttcataagatatg 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagtctggcactagaatatttatataattaataatagatttcataagatatg 263

                                                                       
Query: 64  tttctattatataatttacagtgcttcctattttttccaaaatggaaaatttctgaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctattatataatttacagtgcttcctattttttccaaaatggaaaatttctgaaaat 323

                                                                       
Query: 124 aaaatatttcaaagcacttgcaatcagtctgattataggcattttaggtgtcccctctcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaatatttcaaagcacttgcaatcagtctgattataggcattttaggtgtcccctctcc 383

                                                                       
Query: 184 ccattgatagggatctacttgaaatcactgccaagggattgacttaagttgaaaaatcaa 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccattgatagggatatacttgaaatcactgccaagggattgacttaagttgaaaaatcaa 443

                                                                       
Query: 244 tttgaggtagttgcatcacaaatagagaaggttgacaagaatgtagagagaggattgatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgaggtagttgcatcacaaatagagaaggttgacaagaatgtagagagaggattgatt 503

                                                                       
Query: 304 aattggactcctcagaaatgtaagaaaggggacattttatgtcttaagagacatattttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aattggactcctcagaaatgtaagaaaggggacattttatgtcttaagagacatattttc 563

                                                                       
Query: 364 cagtagtatgtctcagaatgaatctattgaatttaaatgtgctaatcttggtctgcttaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtagtatgtctcagaatgaatctattgaatttaaatgtgctaatcttggtctgcttaa 623

                                                                       
Query: 424 gaattcctataataatgattcctttaatagtatgaaaatgcaaagaagtgaatctcatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattcctataataatgattcctttaatagtatgaaaatgcaaagaagtgaatctcatgg 683

                                                                       
Query: 484 tgatcatgagaaacctgttttaaattagtacgactttaattgatgtcattgtcattagtt 543
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatcatgagaaacctgttttaaataagtacgactttaattgatgtcattgtcattagtt 743

                                                                       
Query: 544 gtgacccatgtactactatagctaaacaatttcagctggctcaggatattcttaaattac 603
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 744 gtgacccatgtactactatagctaaacaatttcagctgggtcaggatattcttaaattac 803

                                      
Query: 604 ttgctacaatataaacagctgtgtgac 630
           |||||||||||||||||||||||||||
Sbjct: 804 ttgctacaatataaacagctgtgtgac 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_h03.g1 MSMg01no117_h03.g1 CHROMAT_FILE:
MSMg01no117_h03.g1 PHD_FILE: MSMg01no117_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
         (594 letters)



>mm_chrX_66987880_66988873
          Length = 994

 Score =  888 bits (459), Expect = 0.0
 Identities = 477/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgggtgttgagagagaggacttgagaggtcaaatttgagtgactcccagaagtagaggcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgggtgttgagagagaggacttgagaggtcaaatttgagtgactcccagaagtagaggcc 424

                                                                       
Query: 64  atacctctagacatggagaatttataaatgttcaaatgcaacaattacaaacattgtata 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 423 atacctctagacatggagaatttagaaatgttcaaatgcaacaattacaaacattgtata 364

                                                                       
Query: 124 acactaaataataacagttaattaaattgtaaccttatatgggtgagctaatacaccaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acactaaataataacagttaattaaattgtaaccttatatgggtgagctaatacaccaca 304

                                                                       
Query: 184 agatgtttgagttctaaattcaagagtcttagagtaaaatttcagttcccttaaaaagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agatgtttgagttctaaattcaagagtcttagagtaaaatttcagttcccttaaaaagta 244

                                                                       
Query: 244 attccgtgatttctgtgagatgaatttctgtgatttttcaaaaagtcatttaatttcttt 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 243 attccgtgatttctgtgagatgaatttctgtgatttttcagaaagtcatttaatttcttt 184

                                                                       
Query: 304 gagatgaaatttccttctccataaaatttgttaaatcatacctacctctcagaatattat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gagatgaaatttccttctccataaaatttgttaaatcatacctacctctcagaatattat 124

                                                                       
Query: 364 gagcatacagtaatatgaacctgtgagcctgtaatatggcttagtaccactgtactaggt 423
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 123 gagcatacagtaacatgaacctgtgagtctgtaatatggcttagtaccactgtactaggt 64

                                                                       
Query: 424 aggattgacttccacattagcagcagcactgactatgtaaacatgcatgtttggacatct 483
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 63  aggtttgacttccacattagcagcagcactgactatgtaaacatgcatgtttggacattt 4

              
Query: 484 cag 486
           |||
Sbjct: 3   cag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)