Query= MSMg01no117_l06.b1 MSMg01no117_l06.b1 CHROMAT_FILE:
MSMg01no117_l06.b1 PHD_FILE: MSMg01no117_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:20 2005
(652 letters)
>mm_chrX_138662804_138663855
Length = 1052
Score = 926 bits (479), Expect = 0.0
Identities = 520/543 (95%), Gaps = 19/543 (3%)
Strand = Plus / Minus
Query: 105 tcatctcccatcttttcattcgtcacatatgaatcttggttctttgcttggcatgtatct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 tcatctcccatcttttcattcgtcacatatgaatcttggttctttgcttggcatgtatct 993
Query: 165 gtaactcggagatgtgcagaggcagggaccctaggtgtgaagtgtgggcaatcattgagt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 992 gtaactcggagatgtgcagaggcagggaccctaggtgtgaagtgtgggcaattattgagt 933
Query: 225 aggctagcaaagcgcttcatttcaagcgcttatgaccaagctcaaaagctactgcgatta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aggctagcaaagcgcttcatttcaagcgcttatgaccaagctcaaaagctactgcgatta 873
Query: 285 aaaaacaaacaaacaaacaaaaaaaccaaaaaaaaaa-----ctgtcaaaatagaagtga 339
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 872 aaaaacaaacaaacaaacaaaaaaaccaaaaaaaaaaaaaacctgtcaaaatagaagtga 813
Query: 340 acgtctaagcagcctcacggagacatttttcttacgttatataaccactcactggtgtct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 812 acgtctaagcagcctcacggagacatttttcttacgttatataaccactcactcgtgtct 753
Query: 400 ggaagt--------gaacctaagaaatgaaacccctcagatccattctcaccagagtatc 451
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggaagtgaattgcagaacctaagaaatgaaacccctcagatccattctcaccagagtatc 693
Query: 452 cctgatgaagtaacccttttgtggaggcagttctagtctttgaaataaataaaaacaatc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cctgatgaagtaacccttttgtggaggcagttctagtctttgaaataaataaaaacaatc 633
Query: 512 gccaccctttttcagggacccggagctt---ct--atctatctatctatctatctatcta 566
|||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 632 gccaccctttttcagggatccggagcttttgcttgctctatctatctatctatctatcta 573
Query: 567 tctatctatctatctatctatctatctatctatctatctatctatctatctatctatcta 626
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 572 tctatctatctatctatctatctatctatctatctatctatctatc-atctatctatcta 514
Query: 627 tct 629
|||
Sbjct: 513 tct 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_l06.g1 MSMg01no117_l06.g1 CHROMAT_FILE:
MSMg01no117_l06.g1 PHD_FILE: MSMg01no117_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:20 2005
(562 letters)
>mm_chrX_138550851_138551812
Length = 962
Score = 1079 bits (558), Expect = 0.0
Identities = 561/562 (99%)
Strand = Plus / Plus
Query: 1 ttttcctctcatttgtaggtaaagtaaacctttgacaaatgtttaggtccattctagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcctctcatttgtaggtaaagtaaacctttgacaaatgtttaggtccattctagctc 260
Query: 61 taaaatgtttggctttgattaagaatcatagcttgtgtttattgaaaattatgtgctact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaatgtttggctttgattaagaatcatagcttgtgtttattgaaaattatgtgctact 320
Query: 121 aggagatctattgacatttcaagcacaaaatggatatattcacatgtaattgccaggaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagatctattgacatttcaagcacaaaatggatatattcacatgtaattgccaggaac 380
Query: 181 agggagattcctatttttcctgaacagatataatgcatctttcatccattatcagcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggagattcctatttttcctgaacagatataatgcatctttcatccattatcagcagaa 440
Query: 241 gtggaaacttggtgtgactttgcaggttggcaattcaacaggagctgcaaaaaattttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaacttggtgtgactttgcaggttggcaattcaacaggagctgcaaaaaattttaa 500
Query: 301 atatgtatactataaggcttctaattcttcagaaaaagcatgcatgtttgcttatacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgtatactataaggcttctaattcttcagaaaaagcatgcatgtttgcttatacaca 560
Query: 361 aatgtacacaaacagagcaagaagaatgcaaacacactttgattttatatggtgtacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtacacaaacagagcaagaagaatgcaaacacactttgattttatatggtgtacaat 620
Query: 421 tggaaataaactaaatatcagtaagggagtagatagatttattatacattcttatctgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaaataaactaaatatcagtaagggagtagatagatttattatacattcttatctgtg 680
Query: 481 ggtaatgttctgcaatacttacaaagaataaggtcaatccatgtgtaatgatattgatat 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtaatattctgcaatacttacaaagaataaggtcaatccatgtgtaatgatattgatat 740
Query: 541 gactacaaaccagatagtaagt 562
||||||||||||||||||||||
Sbjct: 741 gactacaaaccagatagtaagt 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
