BAC Information

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BAC

Clone NameMSMg01-117M13
ChromosomeX (Build37)
Map Location 154,239,688 - 154,392,395
singlet/doubletdoublet
Overlap geneKlhl34, Cnksr2
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117M13.T7 (MSMg01no117_m13.b1)MSMg01-117M13.TJ (MSMg01no117_m13.g1)
ACCAG328824AG328825
length723719
length of high quality
(start - end)
204 (70 - 273)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no117_m13.b1 PHD_FILE: MSMg01no117_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:26 2005CHROMAT_FILE: MSMg01no117_m13.g1 PHD_FILE: MSMg01no117_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,239,688 - 154,239,890)(154,392,151 - 154,392,395)
sequence
CAAAATTTGCGGCGCTAAACGACTACTATATCCAGAAGAGCGCGGAATTC
ACTATGTTTCCATTGAGCTTGTGGCAACCCTTCTTCTTGTGCCTCCGGAG
TGCTGGGATTATTGGTACCAAGTTACATACAAGTACAGATTGCACTTGTG
CAGACTCTTTCACCACTTCTCATTTCCCTTTTGTCACCACTTTCACTCCT
AGGAGTTCCCTTTGTGTCCCTCTAAGTTTCACTTTTGCTTTCATGCTATA
TTATGTATCTATATAGCATCTACAAGTCTCAAATGAGAGAAACCATATCC
TTTGGAGATAGGCTTAATTTGCTTAAAATGATTATTTCCAGTTGCATCCT
CTTTACCAAAAATGACACAACTTTGTTCTTTATGGCTATAAAACCTTCCA
TTGTATGTGCATATTTCATTTTCCTTACCCATTCCTCTGCTGTTGACCAC
TAAAGTTGATTCTATAATGTAGGTTTTCTAAATAATGTTATATGAAAGAT
TCATATGCAAGTATGTGTGTGATGAGTTGACTCGGTGGCAAATTCTCAGT
ATATGTAGAACTGGTCGCTTACGAACATTCTATTTTCAGTTTTTGAAGAT
TTCCACTGCCCTGACTCTCTTCGGGGGCGGGGTTATTGTTACTGTCCGAC
CCTCATTATGTAGATTGGGCCCCCTTTCCCAACCTTCCATACACTTAATT
TTGGGTGTTTGCGTCATAGGTTG
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAAAAATACCTAAAGTGATACAAGTACAGAATGACCAAG
AATACATGCTAAACAAACGTAGATGGAGGGGAAAACATTTGAAATGTAAA
TAAAGAAAATATACAATTTAATAAAGAAAAAAACAGTGAGACCATGCAAC
CCACTGCAGATAATTAATGTACTATATACTGGAGTTATCATTTACTAAAC
TTAATTAGTGTTACATTTCTTCAAATCAGTAAGCCTGAAGTTTCCCTCAA
GGATGGCTTGCCCTTATCTTCTTTTTGACATTTTAGGGACCATCTGTTTT
GATCTGCTAACATCCTTGCTCTATATCGCAAAATGGCTAATGAGAATCTG
AAACTTTCTTCTGTTACATGGGGTTTTGTTCTTGTTTTTTGTTTGTTTGT
TTTTGATGTTGTAGATGATTTTTCCTCACGTCCCCCTCACACTGCCATCT
TCCCCTTATAAAATGCTACTGCTTGTCCTTTGAGTCTTTGACAGACATCC
TGGTGCCGATGCCGCCTTTTTTATTTTAATTCCTGCGAGAAATGTCAACT
CTCTAAAGATCTTAAAATAATCCATGACCAGGGAACGTCATGAAGTGCCG
CCTCGTCATTTCAGCTTAGCCGAAACCCGAGCACGAGTTATTATCTTATC
AGTCGAAAAGCGCGTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_m13.b1 MSMg01no117_m13.b1 CHROMAT_FILE:
MSMg01no117_m13.b1 PHD_FILE: MSMg01no117_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:26 2005
         (204 letters)



>mm_chrX_154239488_154240091
          Length = 604

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcaacccttcttcttgtgcctccggagtgctgggattattggtaccaagttacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcaacccttcttcttgtgcctccggagtgctgggattattggtaccaagttacata 260

                                                                       
Query: 61  caagtacagattgcacttgtgcagactctttcaccacttctcatttcccttttgtcacca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtacagattgcacttgtgcggactctttcaccacttctcatttcccttttgtcacca 320

                                                                       
Query: 121 ctttcactcctaggagttccctttgtgtccctctaagtttcacttttgctttcatgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcactcctaggagttccctttgtgtccctctaagtttcacttttgctttcatgctat 380

                                  
Query: 181 attatgtatctatatagcatcta 203
           |||||||||||||||||||||||
Sbjct: 381 attatgtatctatatagcatcta 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no117_m13.g1 MSMg01no117_m13.g1 CHROMAT_FILE:
MSMg01no117_m13.g1 PHD_FILE: MSMg01no117_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:27 2005
         (245 letters)



>mm_chrX_154391840_154392484
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtgatacaagtacagaatgaccaagaatacatgctaaacaaacgtagatggagggga 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 556 aaagtgatacaagtacagaatgaccaagaatacatgctgaacaaacgtagatggagggga 497

                                                                       
Query: 61  aaacatttgaaatgtaaataaagaaaatatacaatttaataaag-aaaaaaacagtgaga 119
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 aaacatttgaaatgtaaataaagaaaatatacaatttaataaagaaaaaaaacagtgaga 437

                                                                       
Query: 120 ccatgcaacccactgcagataattaatgtactatatactggagttatcatttactaaact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccatgcaacccactgcagataattaatgtactatatactggagttatcatttactaaact 377

                                                                       
Query: 180 taattagtgttacatttcttcaaatcagtaagcctgaagtttccctcaaggatggcttgc 239
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 taattagtgttacatttcttcaaatcagtaagtctgaagtttccctcaaggatggcttgc 317

                
Query: 240 cctta 244
           |||||
Sbjct: 316 cctta 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)