Query= MSMg01no118_d21.b1 MSMg01no118_d21.b1 CHROMAT_FILE:
MSMg01no118_d21.b1 PHD_FILE: MSMg01no118_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:02 2005
(485 letters)
>mm_chrX_153999660_154000539
Length = 880
Score = 762 bits (394), Expect = 0.0
Identities = 412/420 (98%), Gaps = 6/420 (1%)
Strand = Plus / Minus
Query: 66 aaaagagtgctagatctgaccatgtaaattttagcttttaaacctggaattgggaatttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 aaaagagtgctagatctgaccatgtaaattttagcttttaaacctggaattgggaatttg 821
Query: 126 gcttagctggtaaaagtattagtccacaaggatgacaatttgctttcagatcttcagcac 185
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 820 gcttagctggtaaaagtattagtccacaagcatgacaatttgctttcagatcttcagcac 761
Query: 186 ccacagaaaaggccatgaagacagttgaatatgtgaactccatgttcagcaagagaccct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ccacagaaaaggccatgaagacagttgaatatgtgaactccatgttcagcaagagaccct 701
Query: 246 acctcaaaaaatgaaggggatgggggggaaggtggagaataattgaaaaagatacctgat 305
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 700 acctcaaaaaatgaagggga-ggggggga-ggtggagaataattgaaaaagatacctgat 643
Query: 306 gtcaactcctgacctccacactcatgcacacacatgtacatatatccacatattcacatg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtcaactcctgacctccacactcatgcacacacatgtacatatatccacatattcacatg 583
Query: 366 caaaaacccactcttcatggtttgttcttttgtgttctatgatataaggtaccaattatc 425
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 582 caaaaacccactcttcatggtttgttcat----gttctatgatataaggtaccaattatc 527
Query: 426 ctgatgttactctccataatgattgaccggaattttagctttttagacgggtatgtttgt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctgatgttactctccataatgattgaccggaattttagctttttagacgggtatgtttgt 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 880
Length adjustment: 10
Effective length of query: 475
Effective length of database: 870
Effective search space: 413250
Effective search space used: 413250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_d21.g1 MSMg01no118_d21.g1 CHROMAT_FILE:
MSMg01no118_d21.g1 PHD_FILE: MSMg01no118_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:02 2005
(562 letters)
>mm_chrX_153976698_153977659
Length = 962
Score = 1060 bits (548), Expect = 0.0
Identities = 560/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 1 ccatctacagcttgggttttggagaaggattttttgccaattttagtaaagttaaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatctacagcttgggttttggagaaggattttttgccaattttagtaaagttaaagttc 260
Query: 61 accttaaaacagtagatacaacataatttctgagaaggggcagcagaaaaggaagcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttaaaacagtagatacaacataatttctgagaaggggcagcagaaaaggaagcttta 320
Query: 121 tctgagttccatctctgcattaaaaaataatataaataataacatcaaaagacgggattt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tctgagttccatctctgcattaaaaaataataaaaataataacatcaaaagacgggattt 380
Query: 181 cttttttctttttttttc----ttttttttttttggttttcgagacagggtttctctgtg 236
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttttctttttttttcttttttttttttttttggttttcgagacagggtttctctgtg 440
Query: 237 tagccctggctgtcctggaactaactttatagaccaggctggcctcgaactcagaaatct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccctggctgtcctggaactaactttatagaccaggctggcctcgaactcagaaatct 500
Query: 297 gcctgcctctgcctcccaagtgctgggattaaaggtgtgtaccaccacgcccggcaaaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgcctctgcctcccaagtgctgggattaaaggtgtgtaccaccacgcccggcaaaag 560
Query: 357 aagggatttcttatatagaacaaatagtatatcaggcttgcgtcatagaaatggctcagc 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aagggatttcttatatagaacaaatagtatatcaggcttgcatcatagaaatggctcagc 620
Query: 417 agttaagagtacttgctcttgcagaggactagagtttggtccccggcaccactgtctggc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttaagagtacttgctcttgcagaggactagagtttggtccccggcaccactgtctggc 680
Query: 477 accttatagccaccaggaactccaagtccaagggatctgacaggtcgtcagggttaacca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accttatagccaccaggaactccaagtccaagggatctgacaggtcgtcagggttaacca 740
Query: 537 cacgcacctttatccactgggccacc 562
||||||||||||||||||||||||||
Sbjct: 741 cacgcacctttatccactgggccacc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
