BAC Information

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BAC

Clone NameMSMg01-118J17
ChromosomeX (Build37)
Map Location 43,838,902 - 43,976,452
singlet/doubletdoublet
Overlap geneLOC665632
Upstream geneEG385346, LOC100040075, Actrt1, EG245405
Downstream geneEG434775, LOC236775, LOC100040133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118J17.T7 (MSMg01no118_j17.b1)MSMg01-118J17.TJ (MSMg01no118_j17.g1)
ACCAG329436AG329437
length733718
length of high quality
(start - end)
462 (81 - 542)564 (71 - 634)
definitionCHROMAT_FILE: MSMg01no118_j17.b1 PHD_FILE: MSMg01no118_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:31 2005CHROMAT_FILE: MSMg01no118_j17.g1 PHD_FILE: MSMg01no118_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,838,902 - 43,839,363)(43,975,889 - 43,976,452)
sequence
TTCTGGNTGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTGGATTACACCATCTGGCCCAGAGATCATTTT
GGGGGAGGGAGGGACTAGGCTTTCAGTGACTACATCTATTTTCTTAGGGG
TTATATGAATATATAAATAGTTTACTTGATTTTGATTTAACTTTGGTAAG
TGGTATATATTTAGAAAATCATCCATTTTGTTTATATTTTCCAATTTTGT
TGTATACAGCATTTTGACATAAGACCTAAGGATTCTTTGACTTTCCTCAG
TGTCCATTTTTATGTCTCCCTTTACGTTTCTGATTTTGTTAATTTGGGTA
CTGTCTCTCTGTCTTTTAATTGTTTTGGCTAACGGTTTCTACCTTGTTAT
TTTCTCGAAGAATGACTATTTCACAGTTGACTGTATACAGGCTCTTATTA
CATAAATGGGAATAGAAATTTCAAGGAGAGACTCCTATGGGGAGATAGTC
AACACCTGGTAATCCAAACAATTGATTGTAGGAAAAAGACCTGGAGGGTG
GCATGGAGGGGTTATGGGAGGCCAAGGTTTGGACATACTATGGGAATTGC
AGAAAGTGGTTGACTTTTCTTCCCTTCTTTTTTTTTTTTCCTCGCCCATG
TCATTGACTACATAGTTGTTCAGTTTCCATAAGCTTTTAGGCTTAATGCC
GTTTTTGTTGATGTTGAAGCCACCTTTACTCCT
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAAATTTCATACCCATTAGACAGTAAGTA
TTTCATGTCCCTCTTCTTTATCATTAAGCTCTTATTTTTCTGTTTCCCCT
TCTGCAATGCTCCCTGAACCCTGGAGTCAATAACATGAGTGTCCTGTTTA
ACGATGACGGTCATTAAAATTTGATGCACCTAGTCTAACCTTGAGTCTTT
ACTGTCTTCGTTCATTGCACAAAGAATTTTCTTTGATTAAATCTGAGGAG
GATTTATTTTGAAATGTTAATATTAAAATGAGTTAATACCTTGACTAGGC
AATTGAAAATGTAAGTTAAAAATACTAGATATAAACATATGTTAGCCTGT
AGGGATAATTGGCAAACATAATGAGATATTTTGCTAATTATTTTATCTTA
TATGAAAATGTAAGGAATATTACTCTTATTCATAGTTAATATGAGTATTT
ATTGTTGTCATCTTTAAGAAACGATTTTAAACTATTCATCAACATAAGTG
TCAATACTCTTTATATTCCTATATTAGTTACTTATTAATAACTTTTGCAC
ACACTGAACTATGAAGATATGATTCAAATTATCACACCTTATTTCATGCA
AAAGAATATCAAAGTAACTTCATTTTTCTCACGATAAATCTAGAGATTTA
AAAATTATCATTTAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_j17.b1 MSMg01no118_j17.b1 CHROMAT_FILE:
MSMg01no118_j17.b1 PHD_FILE: MSMg01no118_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:31 2005
         (462 letters)



>mm_chrX_43838702_43839563
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcccagagatcattttgggggagggagggactaggctttcagtgactacatctatt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcccagagatcatttttggggagggagggactaggctttcagtgactacatctatt 260

                                                                       
Query: 61  ttcttaggggttatatgaatatataaatagtttacttgattttgatttaactttggtaag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttaggggttatatgactatataaatagtttacttgattttgatttaactttggtaag 320

                                                                       
Query: 121 tggtatatatttagaaaatcatccattttgtttatattttccaattttgttgtatacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtatatatttagaaaatcatccattttgtttatattttccaattttgttgtatacagc 380

                                                                       
Query: 181 attttgacataagacctaaggattctttgactttcctcagtgtccatttttatgtctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttgacataagacctaaggattctttgactttcctcagtgtccatttttatgtctccc 440

                                                                       
Query: 241 tttacgtttctgattttgttaatttgggtactgtctctctgtcttttaattgttttggct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttacgtttctaattttgttaatttgggtactgtctctctgtcttttaattgttttggct 500

                                                                       
Query: 301 aacggtttctaccttgttattttctcgaagaatgactatttcacagttgactgtatacag 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggtttctaccttgttattttctcgaagaatgactatttcacagttgactgtatacag 560

                                                                       
Query: 361 gctcttattacataaatgggaatagaaatttcaaggagagactcctatggggagatagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctcttattacataaatgggaatagaaatttcaaggagagactcctatggggagatagtc 620

                                                     
Query: 421 aacacctggtaatccaaacaattgattgtaggaaaaagacct 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacacctggtaatccaaacaattgattgtaggaaaaagacct 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_j17.g1 MSMg01no118_j17.g1 CHROMAT_FILE:
MSMg01no118_j17.g1 PHD_FILE: MSMg01no118_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:31 2005
         (564 letters)



>mm_chrX_43975689_43976652
          Length = 964

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaatttcatacccattagacagtaagtatttcatgtccctcttctttatcattaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aaaaatttcatacccattagacagtaagtatttcatgtccctcttctttatcattaagct 705

                                                                       
Query: 61  cttatttttctgtttccccttctgcaatgctccctgaaccctggagtcaataacatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttatttttctgtttccccttctgcaatgctccctgaaccctggagtcaataacatgagt 645

                                                                       
Query: 121 gtcctgtttaacgatgacggtcattaaaatttgatgcacctagtctaaccttgagtcttt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtcctctttaacgatgacggtcattaaaatttgatgcacctagtctaaccttgagtcttt 585

                                                                       
Query: 181 actgtcttcgttcattgcacaaagaattttctttgattaaatctgaggaggatttatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 actgtcttcgttcattgcacaaagaattttctttgattaaatctgaggaggatttatttt 525

                                                                       
Query: 241 gaaatgttaatattaaaatgagttaataccttgactaggcaattgaaaatgtaagttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaaatgttaatattaaaatgagttaataccttgactaggcaattgaaaatgtaagttaaa 465

                                                                       
Query: 301 aatactagatataaacatatgttagcctgtagggataattggcaaacataatgagatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatactagatataaacatatgttagcctgtagggataattggcaaacataatgagatatt 405

                                                                       
Query: 361 ttgctaattattttatcttatatgaaaatgtaaggaatattactcttattcatagttaat 420
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 404 ttgctaattattttatcttatatgaaaacataaggaatattactcttattcatagttaat 345

                                                                       
Query: 421 atgagtatttattgttgtcatctttaagaaacgattttaaactattcatcaacataagtg 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 344 atgagtatttattgttgtcatctttaagaaatgattttaaactattcatcaacataagtg 285

                                                                       
Query: 481 tcaatactctttatattcctatattagttacttattaataacttttgcacacactgaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcaatactctttatattcctatattagttacttattaataacttttgcacacactgaact 225

                                   
Query: 541 atgaagatatgattcaaattatca 564
           ||||||||||||||||||||||||
Sbjct: 224 atgaagatatgattcaaattatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)