Query= MSMg01no119_j13.b1 MSMg01no119_j13.b1 CHROMAT_FILE:
MSMg01no119_j13.b1 PHD_FILE: MSMg01no119_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:47 2005
(468 letters)
>mm_chrX_162992187_162993054
Length = 868
Score = 808 bits (418), Expect = 0.0
Identities = 451/462 (97%)
Strand = Plus / Plus
Query: 7 gaattcaataaactatcagattgttttatgtgggtttctccttaatttatacgaatagaa 66
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaataaactattagattgtttcatgtgggtttctccttaatttatacgaatagaa 266
Query: 67 tatttgaaaaagaccctgcaaatatatatgttatctcttaggttgttttgctcaggtaag 126
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 267 tatttgaaaaagaccctgcaaatatgtatgttatctcttaggttgttttgctaaggtaag 326
Query: 127 atctgagtaaatgatgatttagggctaagacatagaggaactagggggcaatacacatta 186
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 327 atctgagtaaatgatgatttagggctaagacatagaagaactagggggcaatacacatta 386
Query: 187 ccttccaaagccccagatgcgctgggcatctgcatgattgcaaccttgggaagctggccg 246
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcttccaaagccccagatgtgctgggcatctgcatgattgcaaccttgggaagctggccg 446
Query: 247 aaggcagcaggtgtgtgctttctgggagctgatgtggcagaagaagatgagatggcaaga 306
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 447 aaggcagcaggtttgtgctttctgggagctgaggtggcagaagaagatgagatggcaaga 506
Query: 307 gaggaggggaggggaaggcaggcagggaaggtgggtttgcctttaagctgaaatacaacg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaggaggggaggggaaggcaggcagggaaggtgggtttgcctttaagctgaaatacaacg 566
Query: 367 cttagaaagcctctcctctcgagaaatgaatggctggagattcccatcctcccccaggac 426
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttaaaaagcctctcctctcgagaaatgaatggctggagattcccatcctcccccaggac 626
Query: 427 atggggttcattatcacagaagggcttttcttttcaggaatg 468
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 atggggttcattatcacagaagggtttttcttttcaggaatg 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_j13.g1 MSMg01no119_j13.g1 CHROMAT_FILE:
MSMg01no119_j13.g1 PHD_FILE: MSMg01no119_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:47 2005
(499 letters)
>mm_chrX_163070337_163071233
Length = 897
Score = 864 bits (447), Expect = 0.0
Identities = 487/501 (97%), Gaps = 5/501 (0%)
Strand = Plus / Minus
Query: 1 ccatgggactgctacccagacctctgagggagaaaaatcaccagaagtg-tatgtatagt 59
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 565 ccatgggactgctacccagacctctgagggagaaaaatcaccagaag-gatatgtatagt 507
Query: 60 tgagtggattgaggaagatggtctgacaatgtgtggtagaagaaagcaacgctccagaat 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 tgagtggattgatgaagatggtctgacaatgtgtggtagaagaaagcaacgccccagaat 447
Query: 120 tgtctctgggtaggcactaacagaaatctcaattaataggaagaaacccattcttgtctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtctctgggtaggcactaacagaaatctcaattaataggaagaaacccattcttgtctt 387
Query: 180 ttccccagtctcttcacaatcctgtattacattttttttttatggcaaagattaccggga 239
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 386 ttcgccagtctcttcacaatcctgtattaca--ttttttttatggcaaagattaccggga 329
Query: 240 agcaactggttaggcaggaatgcagaaagggtagcttagagttgatttagcctatgcata 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agcaactggcaaggcaggaatgcagaaagggtagcttagagttgatttagcctatgcata 269
Query: 300 tagcatctacttaggcctacttctatgtcattctatggaatgtgggaacaaaaataactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagcatctacttaggcctacttctatgtcattctatggaatgtgggaacaaaaataactg 209
Query: 360 ataccaactgtcttagtctgtgttctattgctgtgaggcaacatca-tgaccatacaact 418
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 208 ataccaactgtcttagtctgtgttctattgctgtgaggggacatcattgaccatacaact 149
Query: 419 cttaaaaaggaatatagttaattgagtctggcttattgtttcagatatttagcccattat 478
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 148 cttaaaaaggaatatagttaattgagtctggcttattgtttcagatatttcgtccattat 89
Query: 479 catcatagcaggaaggatggt 499
|||||||||||||||||||||
Sbjct: 88 catcatagcaggaaggatggt 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 897
Length adjustment: 10
Effective length of query: 489
Effective length of database: 887
Effective search space: 433743
Effective search space used: 433743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
