BAC Information

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BAC

Clone NameMSMg01-119J14
ChromosomeX (Build37)
Map Location 111,919,829 - 112,023,710
singlet/doubletdoublet
Overlap geneEG237009, 4930524E20Rik
Upstream geneDach2, LOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
Downstream geneLOC237008, EG664969, EG546362, LOC100039255, LOC623913, LOC546363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119J14.T7 (MSMg01no119_j14.b1)MSMg01-119J14.TJ (MSMg01no119_j14.g1)
ACCAG330175AG330176
length699693
length of high quality
(start - end)		449 (51 - 499)605 (78 - 682)
definitionCHROMAT_FILE: MSMg01no119_j14.b1 PHD_FILE: MSMg01no119_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:47 2005CHROMAT_FILE: MSMg01no119_j14.g1 PHD_FILE: MSMg01no119_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,023,370 - 112,023,710)(111,919,829 - 111,920,433)
sequence
GGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTTTTATTTCACATAAAAAATACCATTTTTTTATATAAGAC
ATTGGCATAGGTCTCACCATCAGGATAACCCTGCTTTGAATTTGATGTCT
ATCCAAGAAATCAATTAAGTACCTTCATTTGAACCATATAGTTCAGTTAT
CCAGCTTTAGTGGTGGTAGTGTCCTCCACTATTTATGGTTTGATCTACAG
ATAATAATTATCAGAGATTAAAGAAGATGATGGAGCTAGATTACAAATTC
CTATAGCATAACTATAAAACATATATATTACACAATTTTCTCAGTGTGGA
AAGACCTTAAATGACAATTCAGTCCAACATTTCTTCATAAATCTTTAGGG
CCTGTGATGGTTTGTTTATTCTTGGACTAGAGAGTGGCACCACCTGGAGG
TATGGCCTTGATGGAATAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGG
TTGGAATAGGTGTGTCACTGCGGATGTGTTATTAATACTCTTACCCCAGT
TGCCTGGAAGTCAGTATTCCACTAGTATCCCGTATGCTGCCACGCTCCCA
CCCCGCATGATAATGGATTGAATCTCTGATTCTGCTTTTTAGCCCCCTCT
CATGCTGCTCTTTTATTTCTTTTGCCTTGTTTTATGCCGCCTGTTTCTA

CCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGATTCACATGCAGATTCATC
CAGTTTTGAGGTTTAGATTACAGGGAGAATCTACAGTTCCTCTTTTTTCA
GTTGTTATATTAATTCATAGAATATTCTAGAATCCCAACACAAAACATAC
ACATAAGATCATCTTCTAACCTAGATGTAGTTCAAAGCTTCAAACTTATA
TAGTCACCATGGTTCTTCCCAAATATCCATATCATAATTTCTGTGTATGC
AAACAGGAATTTGCATATATGTTTCAGAATGTAGGTCTTAATATAGGGAG
ACTGTAGTATGCATCAAATGATTGCAAATTCATTAGCGTTTCAAGGTGTA
GGAAAGATGAGGCGTAAGAAATTGCAGGAGAAATTTGAAGTGCCAGACTG
ACTTTGATAACAGAAGAAATAAATAATAAATTCGGAAGTTCAGAGACTAC
CAGAAGCTGTGAATGGTCTACAGAAGTGATACCCAATAAGGAAATGAAAA
TCTCGTTGTAAAACTGCATGAAACCAATTTGTAACAAAAACCTGAATAAT
TCAAAGAAACTCTTTCCCAAAGCCTTCAATAAATGTAGTTACCCTGCTGT
CACTTTATTTTAGCATGTTATATCTTTGTCAGAGGTGTGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_j14.b1 MSMg01no119_j14.b1 CHROMAT_FILE:
MSMg01no119_j14.b1 PHD_FILE: MSMg01no119_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:47 2005
         (449 letters)



>mm_chrX_112023370_112024218
          Length = 849

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttatttcacataaaaaataccatttttttatataagacattggcataggtc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattcttttattttacataaaaaataccatttttttatataagacattggcataggtc 282

                                                                       
Query: 64  tcaccatcaggataaccctgctttgaatttgatgtctatccaagaaatcaattaagtacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaccatcaggataaccctgctttgaatttgatgtctatccaagaaatcaattaagtacc 222

                                                                       
Query: 124 ttcatttgaaccatatagttcagttatccagctttagtggtggtagtgtcctccactatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttcatttgaaccatatagttcagttatccagctttagtggtggtagtgtcctccactatt 162

                                                                       
Query: 184 tatggtttgatctacagataataattatcagagattaaagaagatgatggagctagatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tatggtttgatctacagataataattatcagagattaaagaagatgatggagctagatta 102

                                                                       
Query: 244 caaattcctatagcataactataaaacatatatattacacaattttctcagtgtggaaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caaattcctatagcataactataaaacatatatattacacaattttctcagtgtggaaag 42

                                                    
Query: 304 accttaaatgacaattcagtccaacatttcttcataaatct 344
           |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 41  accttaaatgacaatttagtccaacatttcttcataaatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no119_j14.g1 MSMg01no119_j14.g1 CHROMAT_FILE:
MSMg01no119_j14.g1 PHD_FILE: MSMg01no119_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:47 2005
         (605 letters)



>mm_chrX_111919629_111920633
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggattcacatgcagattcatccagttttgaggtttagattacagggagaatctacagt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aaggattcacatgcagattcatccagttttgaggtttagatcacagggagaatctacagt 260

                                                                       
Query: 61  tcctcttttttcagttgttatattaattcatagaatattctagaatcccaacacaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcttttttcagttgttatattaattcatagaatattctagaatcccaacacaaaaca 320

                                                                       
Query: 121 tacacataagatcatcttctaacctagatgtagttcaaagcttcaaacttatatagtcac 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacgcataagatcatcttctaacctagatgtagttcaaagcttcaaacttatatagtcac 380

                                                                       
Query: 181 catggttcttcccaaatatccatatcataatttctgtgtatgcaaacaggaatttgcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggttcttcccaaatatccatatcataatttctgtgtatgcaaacaggaatttgcata 440

                                                                       
Query: 241 tatgtttcagaatgtaggtcttaatatagggagactgtagtatgcatcaaatgattgcaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tatgtttcagaatgtaggtcttaatatagggagactgtagtatgcatcaaatgactgcaa 500

                                                                       
Query: 301 attcattagcgtttcaaggtgtaggaaagatgaggcgtaagaaattgcaggagaaatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcattagcgtttcaaggtgtaggaaagatgaggcgtaagaaattgcaggagaaatttg 560

                                                                       
Query: 361 aagtgccagactgactttgataacagaagaaataaataataaattcggaagttcagagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgccagactgactttgataacagaagaaataaataataaattcggaagttcagagac 620

                                                                       
Query: 421 taccagaagctgtgaatggtctacagaagtgatacccaataaggaaatgaaaatctcgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccagaagctgtgaatggtctacagaagtgatacccaataaggaaatgaaaatctcgtt 680

                                                                       
Query: 481 gtaaaactgcatgaaaccaatttgtaacaaaaacctgaataattcaaagaaactctttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaaactgcatgaaaccaatttgtaacaaaaacctgaataattcaaagaaactctttcc 740

                                                                       
Query: 541 caaagccttcaataaatgtagttaccctgctgtcactttattttagcatgttatatcttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaagccttcaataaatgtagttaccctgctgtcactttattttagcatgttatatcttt 800

                
Query: 601 gtcag 605
           |||||
Sbjct: 801 gtcag 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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