BAC Information

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BAC

Clone NameMSMg01-120D01
ChromosomeX (Build37)
Map Location 4,795,959 - 4,796,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D01.T7 (MSMg01no120_d01.b1)MSMg01-120D01.TJ (MSMg01no120_d01.g1)
ACCAG330619AG330620
length721718
length of high quality
(start - end)
519 (45 - 563)444 (76 - 519)
definitionCHROMAT_FILE: MSMg01no120_d01.b1 PHD_FILE: MSMg01no120_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:33 2005CHROMAT_FILE: MSMg01no120_d01.g1 PHD_FILE: MSMg01no120_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGA
ATTCCATTTTTTCCCAAAAAACAGGATACTCAAATGCTTATTAGAAAAGG
TTCTGTCCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAAATGAATT
TTTAGAATTAGAAATCATCTTTAATTAAACATGGTATAGATAAAGCCATC
ATGCAGCAATTCATTAACCTGATTTTATCATAGCTTCAAGAATAGGAGAA
GGAATAAAAAAATGGACAAAATACAACATCTAAATTAACAAAGTGTGATA
TCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGATGCT
CATTACCCATTAGTTTGTCAGCAAGAAAGCCAAATATTACATATCCTATT
GTTTTAGATATATCCTCAAGTAAACAAACACTTTTACATTTAGAGTCTGT
GTGCTTTGAAACTCCATCAAATACCACCCAAAGTCTGCTAGCTGTAGATA
AGCTTCCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTTACAGCTC
TCAAACCCAGACTCCACACTGGGCGGCTGGGCTGTCATCACTCACATATC
CATCCTCTTCAACTGCATCCTTCCAGGGATTTCCTCTTCTGAGTGATGAC
GATACCCCATTCTCAAAGTAAGTCATATTGCAAGTCCCCAAGCCAACTGA
TATTCTGAAAAATTCTGCTAT
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTT
TAATGGGGTTTTTTGAATTTATGGAGTCTAGCTTCTTAAGCTCTTTGTTT
ATATAATATAAATATATATAAATACAAATACTAATATATTGGATATTAGT
CCCCTATCAGATTTAGGGTTGGGAAAAATGTTTTCCCACTCTGTTGGTGG
CCTTTTTGTCTTATTGACAGAGACACAAATTTATAGAGGAGTAATTGGGG
AAAAGCCTCGAAGATATGGGCACAGGTGAAAAATTCCTGAACAGAACAGC
AATGGCTTGGGCTGTAAAATCCACAATCGACAAATGGGACCTCATAAAAT
TGCAAAGCTTCTGTAAGGCACATTGTTTTTGACAAATCAGTTTCCTTTAG
ACTACACCTTCAAGCCACTTAAGGTTGCATTTACAACTAAAATTTATCAT
CTAAATATCAACAGTAATGGCACCATTTATCTTGATAATCTCAGATCATA
GTGTCTCCTGCTTTAACTATTTCTAATGTTCATTTATCCATTTGGTCACT
GCTATGCGATCCAAACCCTGATGAACTCCTAGTGCCAGAAACTTTCCAGA
TCTAAAACCGATAGTGATTAATACAAAAAAATATCCTTGGGATTGGATTT
CAAAGTATGCCCATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d01.b1 MSMg01no120_d01.b1 CHROMAT_FILE:
MSMg01no120_d01.b1 PHD_FILE: MSMg01no120_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:33 2005
         (519 letters)



>mm_chrX_4795755_4796673
          Length = 919

 Score =  890 bits (460), Expect = 0.0
 Identities = 502/516 (97%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttttcccaaaaaacaggatactcaaatgcttattagaaaaggttctgtcc 64
           ||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttagcccaggaaacaggatactcaaatgcttattagaaaaggttctgtcc 264

                                                                       
Query: 65  caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttaattaaacatggtatagataaagccatcatgcagcaattcattaacctgattttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatagataaagccatcatgcagcaattcattaacctgattttat 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaaaaatggacaaaatacaacatctaaattaa 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaaaaatggacacaatacaacatctaaattaa 444

                                                                       
Query: 245 caaagtgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 304
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgtattggcttcgaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 305 ctcattacccattagtttgtcagcaagaaagccaaatatt-acatatcctattgttttag 363
           ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagtcaaatatttacatatcctattgttttag 564

                                                                       
Query: 364 atatatcctcaagtaaacaaacacttttacatttagagtctgtgtgctttgaaactccat 423
           ||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 565 atatatcctcaagtaaaaaaacatttttacatttagcgtctgcgtgctttgaaactccat 624

                                                                       
Query: 424 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                               
Query: 484 gctgttggtgctctttacagctctcaaacccagact 519
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccagact 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)