Query= MSMg01no120_o16.b1 MSMg01no120_o16.b1 CHROMAT_FILE:
MSMg01no120_o16.b1 PHD_FILE: MSMg01no120_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:31 2005
(480 letters)
>mm_chrX_54560346_54561227
Length = 882
Score = 857 bits (443), Expect = 0.0
Identities = 473/483 (97%), Gaps = 4/483 (0%)
Strand = Plus / Minus
Query: 1 caggctagccagagctac-taactgtctcaaaaac-aaccaaagaaaaagaa-aaacaac 57
|||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct: 562 caggctagccagagctacataactgtctcaaaaacaaaccaaagaaaaagaacaaacaac 503
Query: 58 aactggtgctcttcctacttgagtgacctgcacggtaccccatttctccttgctttaaat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aactggtgctcttcctacttgagtgacctgcacggtaccccatttctccttgctttaaat 443
Query: 118 ctcactccacctgaagggaattttctccactttttttccagttgggcaccagtgcacttg 177
||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 442 ctcactccaacttaagggaattttctccac-ttttttccagttgggcaccagttcacttg 384
Query: 178 gtctttctgaacatccttgtctgtaaattcaatcttacaattcacctttgcattatggtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtctttctgaacatccttgtctgtaaattcaatcttacaattcacctttgcattatggtc 324
Query: 238 tcaatggctggcaatgaatggaagtgataggctctctccaaatgatatttccttctctga 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 tcaatggctggcaatgaatggaagtgatatgctctctccaaatgatatttccttctctga 264
Query: 298 aggggcccaggtcaagttcacagaagaaagatctagagtagagcttccaatacacatttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 aggggcccaggtcaagttcacagaagaaagatctagagtagagcttccaatactcatttt 204
Query: 358 ggagaggctgaggatgtagctcactggttgaatacttgttcaacatacacaaaaccctag 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggagaggctgtggatgtagctcactggttgaatacttgttcaacatacacaaaaccctag 144
Query: 418 gtttaatcctcaggaccacgtaaaaagggcatggtgctgcacacctctaatcccagaacc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gtttaatcctcaggaccacgtaaaaagggcatggtgctgcacacctctaatcccagaacc 84
Query: 478 cag 480
|||
Sbjct: 83 cag 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 882
Length adjustment: 10
Effective length of query: 470
Effective length of database: 872
Effective search space: 409840
Effective search space used: 409840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_o16.g1 MSMg01no120_o16.g1 CHROMAT_FILE:
MSMg01no120_o16.g1 PHD_FILE: MSMg01no120_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:31 2005
(521 letters)
>mm_chrX_54411284_54412204
Length = 921
Score = 969 bits (501), Expect = 0.0
Identities = 516/521 (99%)
Strand = Plus / Plus
Query: 1 atatggacctatgaaataatcctgtcccatgctacttatagaaagaaataagattcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatggacctatgaaataatcctgtcccatgctacttatagaaagaaataagattcaatg 260
Query: 61 aaaagaatcctcacctgatgaaggaaaatacagaagtaatttttgtttgatttttaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaatcctcacctgatgaaggaaaatacagaagtaatttttgtttgatttttaaagg 320
Query: 121 aaattatatttactctcaaatctataactatcagaaaatttcctgccatgttttttattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattatatttactctcaaatctataactatcagaaaatttcctgccatgttttttattg 380
Query: 181 tgaaaaaaatttagcagtgtaaattgttgccatattacatcttgtaatagtttagtgact 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tgaaaaaaatttagcagtgtaaattgttgccacattacatcttgtaatagtttagtgact 440
Query: 241 taaaacatcatataatgatttaaggatctgtgctgtagcaagaactttcatttgttattt 300
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 taaaacatcaaataatgatttaaggatctgtgctgtagcaagaactttgatttgttattt 500
Query: 301 tggatccaacattttgccaccagcctcttacccctagggaaatgtaaaatctgaacgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tggatccaacattttgccaccagcctcttacccctagggaaatgtaaaatctgaatgctc 560
Query: 361 gtcaaaatattacataactttcctaaaatggagtactataaaaccagagtttgaatgttt 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaaaatatttcataactttcctaaaatggagtactataaaaccagagtttgaatgttt 620
Query: 421 tttaaaatgtcacttgaattcttagcagtactatcacccacccctccacatacacacatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaaatgtcacttgaattcttagcagtactatcacccacccctccacatacacacatt 680
Query: 481 gtgatttaactacaaattatcccacaaaggctcatgggtta 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgatttaactacaaattatcccacaaaggctcatgggtta 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
