BAC Information

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BAC

Clone NameMSMg01-121A01
ChromosomeX (Build37)
Map Location 151,856,891 - 151,857,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4
Downstream geneLOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121A01.T7 (MSMg01no121_a01.b1)MSMg01-121A01.TJ (MSMg01no121_a01.g1)
ACCAG331229AG331230
length824799
length of high quality
(start - end)
112 (137 - 248)276 (131 - 406)
definitionCHROMAT_FILE: MSMg01no121_a01.b1 PHD_FILE: MSMg01no121_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:38 2005CHROMAT_FILE: MSMg01no121_a01.g1 PHD_FILE: MSMg01no121_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAGAAAANAAGAAGGAAGAAAAAAGAGGAACCCGCCANACCNCCAACT
AACAANATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGACCGCGGAATTCCTCTTTTTATTCAGATGTAGTATCATCTCTTTTAG
TCCGAAAAATCAGTGGAATATCATGTTAGTCTATTTGATCTACCTTTTGG
GGTGTGTGTGTGTGTGTGTGTGTGTGTCGTGTAATGTGTGTTCGTGTTCA
TAAAAATGGCTAATCCGCATTGTGTTTACACATAAATGCTAAGACAAGTG
ATAAGTGTCCTCTGCTCTCCTTATTTGCTCTCCCTACTCGTTCTGAAAAC
ATATCTTTTCTTGATCCTGAAGTTCAAAGATTGATGTCTTTTTACTCAGC
ACGCTCCCCTTTTTTTACAGTCTTGTTCTTTTCCCCCTCTCCCCTACCTA
TGATTTTTTGGATTTTTTAACCACGTCTTTCCGACTCGTAAGAAAATCAC
TTTTCCGTTATGTCGGGATTCTAAACTGGTCTCAACCGAAACATAACACA
TTTGTCTACCAATTGTGTTTTTAACCCCCCCCTCTCCTTTATATCTTTCT
ATGTTGTTCTTCGTATCCAAATCCCGTTTTATTATATTGTATCGCCAACT
CAAGATCCTCCACCGAATACTTCAATTTTTATCATTCTATCTCATCCGCC
AAAACACTATTATTGTTTAATTCTCCCTCCTTCACAATTTCTTTTATTTT
TCTCCTGGTTTACATCTTCTCACACATATTTTTTTATTTCTATTACTGTC
GCTGAAATGTGTTGTGATAATAAA
AGAGGGGAAGGGAGAAAAGAAAGGGAACAGAACAGCGAAACCGACAAAAN
CGACAATCGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTACAAGTAGTTTATTG
AGAATTTTTGCATCTGTGTTCCTAAGGGATAATGGTCTATAATTTTCTTT
TTTGTTGGGTCTTTGTGTACCTTTGGTATATAGTAATACTAACTTTATAA
AAAGAATTAGAAAGTAATATTCCAACAAATGTTCCTATGCCCTTGACCAT
ACTCGCAGCACTTAGTGGGCTCATTATGTTTTATAGAAATGATCACATAA
TATTAGAAGGGAATAGTTGTGGGGGGAAGAGGGGTAGAAATTGGAGGGGA
GGAAACAGGGAATTAATTTGATTTTTTATCGCACCCCCCTAATGTTTTGA
AATTCCCAAAGTATTTTTATCAGAGCCAATGATATACATATAATTTATTA
TCCAACCGCAGGAATTGCAACCTTCGTCCTTCTTACCCTTTTTATAAAAA
AACCCTGCCCATATAACATGTATTCATTTTCTCATATTTTGACCCCCCCC
CCTATTATCTTTTTTTTTTACTCCCATATAACCCGGGTGAACAAAGATCT
TCCCGCCTTCTCAAAATTAATTATATATTGGCCTCCCCGCTTATCCCCCC
CCCACTTTGATATTATTAAGAATTCCCTCGCCGCACCCCATATCTTCACC
GCCCTTCTCCTTTTTCCCCCCTTATTTTTTTTTTCCCATCCCACCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_a01.g1 MSMg01no121_a01.g1 CHROMAT_FILE:
MSMg01no121_a01.g1 PHD_FILE: MSMg01no121_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:38 2005
         (276 letters)



>mm_chrX_151856548_151857222
          Length = 675

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%), Gaps = 1/276 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttacaagtagtttattgagaatttttgcatctgtgttcctaagggataatggtctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtttacaagtagtttattgagaatttttgcatctgtgttcctaagggataatggtctat 559

                                                                       
Query: 61  aattttcttttttgttgggtctttgtgtacctttggtatatagtaatactaactttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattttcttttttgttgggtctttgtgtacctttggtatatagtaatactaactttataa 499

                                                                       
Query: 121 aaagaattagaaagtaatattccaacaaatgttcctatgcccttgaccatactcgcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaagaattagaaagtaatattccaacaaatgttcctatgcccttgaccatactcgcagca 439

                                                                       
Query: 181 cttagtgggctcattatgttttatagaaatgatcacataatattagaagggaatagttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cttagtgggctcattatgttttatagaaatgatcacataatattagaagggaatagttgt 379

                                               
Query: 241 ggggggaagaggggtagaaattggaggggaggaaac 276
           |||||||||||||| |||||||||||||||||||||
Sbjct: 378 ggggggaagagggg-agaaattggaggggaggaaac 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space:   177822
Effective search space used:   177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)